Kwoniella shandongensis: 43587018
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Entry
43587018 CDS
T11156
Symbol
CI109_100438
Name
(RefSeq) uncharacterized protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ksn Kwoniella shandongensis
Pathway
ksn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
43587018 (CI109_100438)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ksn03000
]
43587018 (CI109_100438)
03019 Messenger RNA biogenesis [BR:
ksn03019
]
43587018 (CI109_100438)
04121 Ubiquitin system [BR:
ksn04121
]
43587018 (CI109_100438)
Enzymes [BR:
ksn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
43587018 (CI109_100438)
Transcription factors [BR:
ksn03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
43587018 (CI109_100438)
Messenger RNA biogenesis [BR:
ksn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
43587018 (CI109_100438)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
43587018 (CI109_100438)
Ubiquitin system [BR:
ksn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
43587018 (CI109_100438)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
zf-C3HC4_3
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
43587018
NCBI-ProteinID:
XP_031862707
UniProt:
A0A5M6C9A8
LinkDB
All DBs
Position
1:complement(join(1236466..1236482,1236545..1236808,1236861..1238165,1238213..1238325,1238377..1238744,1238799..1238949,1239003..1239112,1239172..1239252,1239398..1239595))
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AA seq
868 aa
AA seq
DB search
MAPPSLHPLPANPTTGQQPLASLGGGGGSGRIGGGYSAAPPASASSGGVSRDTLKGLQDV
YWSEDEDDPDCLLCAEPLDLSDLNFKPCQCGLQICQFCYNKLLQTDSRCPGCRRPYDAKA
VVFQPVDWEEVKRAKERKTKRAKTIKQLTSMGRRHLLNVRIVMKNTVYVVGMKLPAPGDE
AIPILRSNDYFGQYGKISKLYLGDRTKVSSSSVTTLTPDNPSTSTGIYIVYIRREDAARA
IASLDGIPAPQGPPGSVLKATYGTTRYCDAFLRGTKCDNSTCHSLHEWGGESDCFTKEDM
DTALTRPQEYDARQKQTQLPPPSLSSKIAWPKPSAEDVNGSSSTGLPSGASWGKGVGTKG
VARPPPPSAISRPTKIGNLVPLGKNNSAFPLPTPSPTIPITIKEKKERKSGASAMARGRS
TDSAQSATTSSNQTSPKKKPSALLPVTSVKSVPAPSGPAPPPGIPTSAPSSSTAPTSEPA
DESVDERFSADSDAGPSSSSPAPQTPARTTEDIPPAPLSSEPILIHSPYPEPVIFSFPAH
DKDFAFVLGLDDGELQLRQAQAEGYEPSPFSKTLEGLAELGVHAPEVPDLFTAPASPLGS
MQYTGLFRPFEADDNSPALSDNTPGPSRSREEDHNAQRTESRFGFARTNSASARGQSPFS
ALRRSVAEPPNLRDGWYTRQNVNDESLLHQLHNDNRAASLAAQVASFVGSYDSSSATEAG
WTGESAYSASPSHHRQLGMQNYDRGNDGRRLDHGMLQGQFMQAKGLRVDRDDYEAPLLQY
GNAQIYGNQAQQQPQQPQQQQQQRNMFSPESAPRSIHDDAAFQSPMAFSQLQAQQTPMQH
PDARQLMQLHHQNRQSPSPMPAHAYRRF
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggctcctccgtccttgcatccacttccagccaacccgacaacaggtcaacaaccactc
gcaagtcttggaggaggaggagggagtggaagaataggaggaggttattcggcagctccg
ccagctagcgcgtcaagtggaggagtcagcagagatacgctcaagggattacaagatgtc
tattggagcgaagacgaggatgatcccgactgtctgctctgtgccgaaccgctggacttg
tcagatctcaacttcaagccttgtcaatgtggtctacagatctgccaattctgctacaac
aagctgctacaaacagattctcgttgtccgggttgtcgaagaccgtatgatgcgaaagcg
gtagtcttccaacctgttgactgggaagaggtcaaacgcgccaaggagaggaagacaaaa
cgggcaaagacgatcaagcaattgactagcatgggacgtcgacatctgctgaatgtcagg
atagtcatgaagaatacggtttatgtcgttgggatgaagctaccagctcctggcgatgaa
gctatacctattctgcggtccaacgattacttcggtcaatacggcaaaatatcaaagctt
taccttggtgaccggacaaaggtctcttcctcctcagtcaccactctcactccggacaat
ccttccacatccactggaatatacatcgtatacatacggagagaagatgccgctcgtgct
atcgcttctttggacggaataccagctccacaaggtcctcctgggtcggtcttgaaggcg
acttacgggaccacacggtattgcgacgctttcttgagaggaacgaagtgcgataacagc
acctgccatagtctgcatgagtggggaggagaaagtgattgcttcaccaaggaggatatg
gacacagctttgactcggcctcaggagtacgatgcccgacaaaagcaaacgcaactacct
cctccatcactgtcatccaagatcgcctggcccaaaccttcagcagaggatgtcaacggt
tcttcatcgaccggtcttccgagtggagctagttggggcaagggtgttggaaccaaagga
gttgctcgaccaccaccgcctagcgccatttctcgtccgaccaaaatcggcaatctcgta
ccactcggcaaaaacaactccgcgttccccctccctaccccttcccctacgattcccatc
acgatcaaggagaagaaggaacggaagtctggagcttcagcgatggccagaggacggagt
acagattcggctcaaagcgcgacaacaagcagcaatcagacctcgccgaagaaaaagcca
tccgccctcctccctgttacttcggtcaagtccgttcccgcaccatcaggcccagctcct
ccacctggcatccccacgtccgcgcctagttcttccacagccccgacttccgaaccggcc
gatgaatcagtggatgagcgattctccgccgattctgatgcgggtccatcatcctcctca
ccagctcctcaaactccagcccgaaccacagaagacatccctccagcacccttatcatcc
gaacccatcctcattcattcaccatatcccgaacccgtcattttctcattccccgctcac
gacaaagactttgcgttcgtccttggtctcgacgatggagaactgcagctcagacaggcg
caagccgagggatatgaaccaagtccattcagcaagactcttgaaggattggcagaactc
ggtgtgcatgctccagaagtgcccgatctattcaccgcccctgcctcaccattaggcagc
atgcaatatacaggattgttccgaccgttcgaagccgacgacaactcgccagctctttcc
gacaacacgccgggaccctcacgcagtcgagaggaagaccacaacgctcagcgaacagaa
tcgcgtttcggttttgctcgcacaaacagtgcttctgcgcgaggtcaaagccctttcagt
gcgttacgtcggtctgtagcggaaccaccaaacctcagagacggatggtacacccggcag
aacgtgaacgacgagtcgctacttcatcaactgcacaacgacaaccgagcggcatcatta
gcagctcaggtagcgtcttttgtgggcagctacgactcgtcgtcggccactgaagcagga
tggactggagaatctgcttactctgcttcgccatctcatcatcgacagctaggtatgcag
aattacgatcgaggaaatgatggaaggagactagatcatgggatgctgcaaggacagttc
atgcaagcgaaaggattgcgggtggatcgtgatgactacgaagctcctttgttgcagtac
ggtaacgctcagatctacggcaaccaagcccaacagcaaccacaacagccgcagcaacaa
caacaacaacgcaacatgttctccccagaatctgctcctcgttccatccatgacgacgct
gcattccagtcacccatggcgttcagtcaactccaagcgcaacagacgccgatgcaacat
ccggatgcgagacaattgatgcaactgcatcatcagaacaggcagtctccttcgcctatg
ccggcgcatgcctaccgtcgattctga
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