KEGG   Kwoniella shandongensis: 43587922
Entry
43587922          CDS       T11156                                 
Symbol
CI109_106440
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
ksn  Kwoniella shandongensis
Pathway
ksn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ksn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    43587922 (CI109_106440)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ksn03019]
    43587922 (CI109_106440)
Enzymes [BR:ksn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     43587922 (CI109_106440)
Messenger RNA biogenesis [BR:ksn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     43587922 (CI109_106440)
  mRNA degradation factors
   3'-5' decay
    Pan complex
     43587922 (CI109_106440)
SSDB
Motif
Pfam: UCH_1 RNase_T PAN2_N UCH Beta-prop_RIG_2nd WD40_CDC20-Fz Beta-prop_THOC3 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR5 WD40_WDHD1_1st WD40 Beta-prop_WDR3_2nd FYVE_CARP1-2 WD40_Prp19 Beta-prop_EML Beta-prop_EML_2 WDR55 Beta-prop_WDR3_1st Beta-prop_HPS5 KNTC1_N
Other DBs
NCBI-GeneID: 43587922
NCBI-ProteinID: XP_031861793
LinkDB
Position
12:join(400886..401217,401375..401701,401789..402241,402308..402650,402702..402784,402846..403096,403146..403450,403508..403822,403876..403939,404000..404222,404288..404393,404469..404649,404704..404778,404835..404894,404959..405437)
AA seq 1198 aa
MNYNPLHLLPLPPQSVDPKPISTALTVDPFSDVLWIGTSSGSVSALCTPLSLTRNVQFPA
HGARSVGPYLPHQGMSPAVKEIRVTDRDVWTLTEGGVGGRKRGGASKWNVGDPTRSLQSM
TPNPTNSHEVLAGGSGQMLLANTSRGEVVRRIEAQSPVVHLAPLHRTVLSAGMSGQVTVL
DPRTGFKAAAGMGSVQAHTGGLSGADVQGNMVCTWGWTHMQGHPLPDPLVRIYDVRTLRP
LPPISFPAGPAFALLHPTDTSKLVLSSQQGMLQIIDMSIGSTTSSSSLNFQQLDVNSYVT
SMALSPRGDYLAFGDADGQLHLWTTHEVGENAVLDDRGGLVLPPFNGYEGIKPEWPDAAD
APPPIPWDDTTPLNLIGMPYYNEPLLSNFSPETYATSTSPFYNPPATIPNSVLSTVKMVD
FVGYATNPKELRGKRYVLTARPGAGKKTTGGNGVGGGRRDSEPRFRSEKDKKSARAEEQA
DLEEVTPDGEIPKYYRKVEIKYSKFGIEDFDFEFYNRTKYSGLETDILNSYTNSLLQALH
YIQPIRAVATAHICVDCKKEHCLLCEAGFLFRMLEDAKGRNCQASNFSRAFSATPQASAL
GLMDDNDKSTAPYGSLIQNFNRWLLSTFSTEAVVEGETFDLRPQTTEIDGLSIQDQKPSA
IDQVLGIQTKTTNTCRSCGFVSSRDTTLHAVDLIYPRKSSTHPTFSEIVRSSIFRESTTK
AVCSNCKQFAPLESRRVLSQTTKNPLPPVISINAMMNTADVFEVWKDRSEGSTKKYFLPP
RLGVDEMLGGESKGLDQAVYEVRSMVVQVQERADTPAHLVSFIKIPNKEDENDQSSWIMF
NDFLVRKVTEEEVFRFPDQWKVPAVIILERSDSGTVLELGKLPKQLNAEALFKDVSIAWN
RRTNMIKHKVLQPEEMPKPGTLVAIDAEFVALQQEEMEFRSDGTKNILRPSHMSLARVSV
LRGEGALEGKPFIDDYIHTSEAVVDYLTEYSGIKAGDLDPNNSPHTLVPLKVAYKKLRLL
VDLGCIFIGHGLSKDFRTINIYIPPEQVMDTVNIYTIPGRQRKLSLRYLAWYLLKKDIQT
HSHDSIEDARYALLLFKLWRDYENEGDGVFESIMDDVFNEGHKVGFKPPSAVVDRSASPA
GNFPPLAQGKNGGKKKGGGKEKKDEDKEKRGHLMVPPSTWNGNGGQSGNGGPGSGRRW
NT seq 3597 nt   +upstreamnt  +downstreamnt
atgaattacaatcctcttcatctccttcctctcccaccgcaatctgtcgaccccaaacct
atctctacggcactgacagtcgaccctttctccgacgtattatggatcggtacttcctcc
ggttccgtctcagcattatgtaccccgctctccttgacgcggaatgtgcaattcccagca
catggagcgagatcggttggtccgtatctacctcatcaggggatgagtcctgccgtcaag
gagattagagtgacagacagggatgtgtggacattgacggaaggtggggtcggagggagg
aagaggggtggtgcgtcgaagtggaacgtaggcgaccccacacgttctttacaaagtatg
acaccaaaccctaccaactctcacgaagtcttagctggcgggtctggtcagatgctcctc
gccaacacttcacggggtgaagtcgtccgacgaatcgaagcgcaatcacctgtagttcat
ctcgcaccattacatcgaacggtattgtctgccggaatgtcgggacaagtgacggtactg
gatccgaggacggggttcaaagctgctgctgggatggggagtgtacaagctcatacgggt
ggattgagcggggcggatgtacagggtaatatggtgtgtacgtggggatggacacatatg
caaggacatcctcttcctgaccctctggtacggatatacgacgtacgaacattacgaccc
ctcccacccatttctttccccgctggacccgctttcgccctcctccatccgaccgacaca
tccaaactcgtcctttcctcccaacaagggatgcttcaaatcattgacatgtctatcggt
tccacaacatcttcgtcgagtctgaacttccaacaactcgacgtgaactcgtatgtcact
tcgatggcgctgagtcctagaggagattatctagcgtttggagatgcggatggtcaactg
catctctggacgacgcatgaggtgggagagaacgccgtgttggatgataggggtggattg
gtgctcccgccattcaacggatatgaaggaatcaagcctgaatggccagacgctgctgat
gcgccccctcccataccttgggacgataccacccccctgaacctcatcggaatgccatat
tacaacgaaccccttctctctaatttttccccggaaacatatgccacctccacctcccca
ttctataatcctcccgctactatccccaactccgttctctcgacagtgaagatggttgac
tttgtaggatacgctacgaacccaaaggaattgagagggaagcgatatgtcctcactgct
agaccaggtgcagggaagaagacgacgggcgggaacggtgtaggtggaggaagaagagat
agcgagcccaggttcaggagtgagaaggacaaaaagtcggccagagcggaagaacaagca
gatctggaggaggtgacgcccgatggcgagataccaaagtattacaggaaagtggagatc
aagtattccaagttcggtatcgaagatttcgatttcgaattctataaccggacgaaatac
agcggtctcgagaccgacatcctcaactcgtacaccaactccctcctccaagcacttcat
tacattcagcctatccgagcagtcgccacagcgcacatatgtgtcgattgtaagaaggag
cattgtttgctttgtgaagctgggttcttattcaggatgttggaggatgcgaagggacgg
aattgtcaggctagtaatttctcaagagcgttcagcgctacgcctcaagcctccgccctt
ggcttgatggacgataatgacaagtccactgcaccatacggctccttgatccaaaatttc
aatcgatggctattatcaacattcagcacggaggcggtcgtggaaggcgagacgtttgat
cttcgaccacaaacgactgagatcgatggattgtcaatacaggatcagaaaccctctgct
atcgaccaggtattagggatacaaaccaaaacgacgaacacgtgtagaagttgtggtttt
gtgtcttcgagagataccaccttgcacgccgtcgatcttatctatcctcggaaatcatct
acccaccccaccttctcagaaattgtccgctcatccatcttccgagaatcgacgacgaaa
gccgtatgcagtaactgcaagcagtttgcacctttggaaagtcgaagagtcttatcccaa
actaccaagaaccctctccctcccgtcatctccataaacgcaatgatgaacaccgccgac
gttttcgaagtttggaaagataggagtgaggggtcgacgaaaaagtatttcttaccgcct
cggctaggagtggatgagatgttaggaggcgaatcgaagggtttggatcaagcggtttat
gaagtcagatctatggtcgtccaggttcaagaaagggcagatacgcccgcacatctggtt
tcgtttatcaagataccgaacaaagaggacgaaaacgaccaatcctcgtggatcatgttc
aacgatttcctagtccgaaaagtgacagaagaagaggtattccgattcccggaccaatgg
aaagtccccgccgtgatcatactggaacgaagcgatagcgggacagttctggagctgggc
aagctgccaaagcagttgaatgcggaagccttgttcaaggatgtctcgatcgcttggaac
cgacgaacgaatatgatcaaacacaaggtgttacaaccagaagagatgccgaaacctggc
actttggtcgcaatagatgcagagtttgtggccttgcaacaggaagagatggagttccga
tcagatggcacgaagaacatcctccgaccatcgcacatgtcgcttgcgagagtatctgtc
ctgcgtggtgaaggcgcgctggaaggtaaacccttcattgatgattacatacatacgagc
gaagcagtggtcgactatttgacagagtattctggtatcaaagcgggagatcttgatccg
aataactcgccgcatacgttggtaccgctcaaggtggcatacaagaagttgcgattgctg
gtcgacctggggtgcatcttcattggtcatgggctatcaaaggacttcagaacgatcaac
atctacatacctcctgaacaagtcatggacactgtcaatatctacactatcccaggacgt
caacggaagctttcacttcgatatctcgcatggtatctgctcaaaaaggatatccaaacg
cattcccacgattctatcgaagatgcgcggtacgcccttctgttattcaaactatggcga
gattacgagaacgagggagatggtgtgtttgagagtatcatggacgacgtgtttaacgaa
ggtcataaagtgggattcaagcctccgagcgctgtggtagatcgatcagcttcgccggcg
ggaaactttccacccttggcacaggggaagaatggcgggaagaaaaagggaggagggaag
gagaagaaggatgaggataaagagaagagaggacatttgatggtgcctccatcaacttgg
aacgggaatggaggtcaaagtgggaatggtggtcctggatctggacggagatggtag

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