Kwoniella shandongensis: 43588856
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Entry
43588856 CDS
T11156
Symbol
CI109_102288
Name
(RefSeq) uncharacterized protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ksn Kwoniella shandongensis
Pathway
ksn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ksn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
43588856 (CI109_102288)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ksn03041
]
43588856 (CI109_102288)
Enzymes [BR:
ksn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
43588856 (CI109_102288)
Spliceosome [BR:
ksn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
43588856 (CI109_102288)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
43588856
NCBI-ProteinID:
XP_031860834
UniProt:
A0A5M6BYJ1
LinkDB
All DBs
Position
4:complement(join(715404..715516,715584..715770,715833..716168,716225..716734,716784..717076,717128..717230,717283..717728,717776..718942,718994..719042,719091..719129))
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AA seq
1080 aa
AA seq
DB search
MDLKTYISDNVVQIFGSADNATVDYVQSLATSSKTPGDLYHSLLATGLSESPNIQTFAAQ
VHALVPRKTKTKAPKAEKSASSQRFALLLDEVESGGSSSSSRKEKKSKSKGKDKEKERGD
RDNGAVKLGRSARKRDTDGNWESDEEEKEKEAKRLRMLSPPRDENGDDPGEPPIEETEEE
RLEREREEDLRARDEFAERMKEKDKDRTKKLVTDRSTKSKGGLEASQRAALADDPEARKA
VMEDLRLHSRQEYLTKREQQRLDLLKMEIEDEKILFRNQKMSKRELEDFERKKELIKIME
ARQRIDDGTDGYMLPDDYITEQGRIDQKKKKNALYQRYEEAKPIDGQFITDVDQWEASQT
DKSSLRTGALDKEVMVEDYEYVFDESQKIKFLEEGKLDGTLTAEAQALLDQVDELEKKAQ
SIQEVRDSLPIFEFRDELLAAIAEHQVLVVVAETGSGKTTQLPQYLYEAGYCKNGMKVGC
TQPRRVAAMSVAARVAEEMGVRLGQEVGYSIRFEDMTSDKTALKYMTDGMLLREFLTDPE
LSTYSAIVIDEAHERTLSTDILFGLVKDIARFRPELRLLISSATLNAQKFADFFDQAPIF
DVPGRRFPVDMFYTQQPEANYMHAAVTTILQIHTTQPKGDILLFLTGQDEIESAEENLKE
TMYALGDKVPELIIAPIYANLPSEMQSKIFEPTPEGARKVVLATNIAETSITIDGVVYVI
DPGFVKQNNYNPKTGMSSLVVEPISRASAQQRAGRAGRVGPGKAFRLYTKWAFKNELLQD
TIPEIQRTNLGMVVLMLKSLGINDVLNFDFLDKPPAETIIRSFELLYALGALNHKGELTR
LGRRMAEFPVDPMLSKAIINSENFKCTHEVLTIISMLQESGSLLYRPKDKRVHADKAHKN
FIKQGGDHFTLLNIFEQWVESSYSQQWCLENFIQFKSLGRVRDIRDQLAQLCDRVEVVIE
STPNETTPVQKAITAGYFYNTARIDKGGGYRTTKNNHSVFVHPSSCLVGMQPPPRFILYY
ELVLTSKEYMRQCMPIEGSWLAELAPHYFNKNEIEQLMGSASRVKMPKEVQQPRVGPVVT
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggacctcaaaacgtacatcagcgacaatgtcgtccagatcttcggctctgcagacaat
gcgacagtcgactatgtacagtcactagcaacttcttcgaaaacacccggcgacctctac
cactctttactggccaccggtctgtccgagtctccgaatatacaaacctttgccgctcaa
gtacatgctttagtacctcgcaagaccaagacaaaggcacccaaagcggagaaatcagca
tcatcccagcgattcgctctcttgcttgacgaagttgaatctggcgggtcgagtagttct
agcaggaaggagaaaaagtcaaagtcaaagggcaaagacaaggagaaggaacgtggagat
cgggacaatggagctgtcaaactcggaagatctgctaggaagagagataccgatgggaat
tgggagtcagatgaggaggagaaggaaaaggaggcgaaacgattgagaatgctatcacca
ccgagggatgagaacggggatgatccgggagaaccgcctatagaagagacagaggaggaa
cgactagaaagagaacgagaggaagacttgcgggcgagagacgagttcgcggagaggatg
aaagagaaagataaggacaggacaaagaaattggtgacggaccgatctaccaaatcgaag
ggcggtctggaagcttcccagagagctgctcttgccgatgatccagaagcgagaaaagct
gtcatggaagatttgagattacattctcgacaagaatatctcacgaagagagaacaacaa
cggctggatctcttgaagatggagattgaagatgagaagatccttttccggaaccagaag
atgtcaaagcgagaacttgaggatttcgagaggaaaaaggaactcatcaagattatggaa
gctcgacaacgtatcgatgatggaacggatggatacatgttgccagacgattatatcacg
gagcaaggaaggatcgatcagaagaagaagaagaatgcgttgtatcagcgatatgaggaa
gcgaaaccgatcgatgggcaattcattacggatgtagatcaatgggaggcgagtcagaca
gacaagtcgagcttgagaacgggagcgttggacaaggaggtgatggtggaggattacgag
tatgtctttgacgagagtcagaagatcaagttcttggaagaaggcaagctggacgggact
ctgacagcagaagcgcaagcattgctggatcaagttgacgagttggaaaagaaagcgcaa
agcattcaggaagtccgagactctttaccaattttcgaattccgtgacgagcttttagca
gcgatagcggaacatcaggtccttgtcgtcgttgccgaaacaggttcaggaaagacaaca
caactaccgcaatatctttacgaagctggatactgcaagaacggcatgaaagtcggctgt
acacaaccccgtcgtgttgccgccatgtccgttgcagcgcgtgtagcggaagagatgggt
gtgagactaggacaagaagttggatactcgatccgattcgaggacatgacgagtgataag
accgctctcaagtatatgacggatggtatgctgttgagagagttcttgaccgatccggaa
ctgtcaacctattcggcgatcgtcattgacgaagcgcacgagagaacgttgagtacagat
atcctgttcggattggtcaaggatatcgctcgtttccgacctgagctgcgtctgctgatt
tccagtgcgacattgaatgctcagaagtttgccgacttctttgaccaagcgcctatcttc
gatgtacctggtcgtcgattccctgtcgacatgttctacacccaacaacccgaggccaac
tatatgcatgcggcagtcaccacaatcttgcagattcacacaacgcaaccgaaaggcgac
attcttcttttcctgactggtcaagacgaaattgaatcagcggaggagaacttgaaagaa
acgatgtatgcgttaggtgacaaggtgccagagttgatcatagcaccaatctatgcgaac
ctgccgagtgaaatgcaaagtaagatcttcgagccaacaccggaaggagcgagaaaggtc
gttctggcaaccaacatcgccgagacctccatcactatcgatggtgttgtgtatgtcatc
gacccgggattcgtaaagcaaaacaactacaacccgaaaaccggaatgtcgtcgctggtt
gtcgaaccaatttcccgagcttctgcacaacaacgagctggtcgagctggtcgagtcggt
cctggtaaagctttcagactgtacaccaagtgggcgttcaagaacgaactgttacaagat
accatcccggagatccaacgaaccaacctcggcatggttgttctgatgctcaaatcgttg
gggataaacgatgttctcaactttgatttcttggataaaccgccggcggagacgatcatt
cgttctttcgaattgttgtatgcgcttggtgcgctcaatcacaaaggagagttgacgaga
ttgggtcgaaggatggcggaattccccgtggatccgatgttatcaaaagccataatcaac
agcgagaactttaagtgtacccatgaggttctcactatcatctcgatgttacaagagtcc
ggatctctgctctatcgacctaaggataagcgtgtccatgccgacaaagctcacaagaac
tttatcaagcaaggtggcgaccatttcaccttgctcaatatctttgagcaatgggttgag
agcagctactctcaacaatggtgtcttgagaactttatccagttcaagagtttgggcaga
gtacgagatatccgggatcagctggcacagctgtgtgatagagtcgaggtggtcattgag
agtacgccgaatgagactacacctgtacaaaaggctatcacagcgggatacttctacaat
acggcacgaatcgataaaggcggtggttatcgaacgacaaagaacaatcactcggtcttc
gtccacccttcatcgtgtttggtcgggatgcaaccgcccccacgattcattttgtactac
gagctcgtcctcacttcgaaagagtacatgcgacagtgtatgcctattgaaggatcatgg
ttggcagagctcgcgccgcattacttcaacaagaatgagatcgagcagttgatgggaagc
gctagtagggtgaagatgccaaaggaggtacagcaaccaagggttggcccggtggtcacg
tag
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integrated database retrieval system
