Kwoniella shandongensis: 43589686
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Entry
43589686 CDS
T11156
Symbol
CI109_105014
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ksn Kwoniella shandongensis
Pathway
ksn03013
Nucleocytoplasmic transport
ksn03015
mRNA surveillance pathway
ksn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ksn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
43589686 (CI109_105014)
09122 Translation
03013 Nucleocytoplasmic transport
43589686 (CI109_105014)
03015 mRNA surveillance pathway
43589686 (CI109_105014)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksn03019
]
43589686 (CI109_105014)
03041 Spliceosome [BR:
ksn03041
]
43589686 (CI109_105014)
Enzymes [BR:
ksn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
43589686 (CI109_105014)
Messenger RNA biogenesis [BR:
ksn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
43589686 (CI109_105014)
Spliceosome [BR:
ksn03041
]
Complex C
Other components
EJC/TREX
43589686 (CI109_105014)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
43589686 (CI109_105014)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
CMS1
DNA_ligase_A_N
Ned1_M
Motif
Other DBs
NCBI-GeneID:
43589686
NCBI-ProteinID:
XP_031860256
UniProt:
A0AAJ8LKV0
LinkDB
All DBs
Position
9:complement(join(176725..176919,176981..177089,177149..177258,177312..177443,177496..177614,178235..178536,178600..178708,178771..178838,178902..179050))
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AA seq
430 aa
AA seq
DB search
MSRPDEEELVDYDEAAEETFAPATTTATNGDKADGDKKGSYVGIHSTGFRDFLLKPELLR
AISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIVI
LCHTRELAYQIRNEFARFSKFMTNVRTGVFYGGTPISADQEILASKEKCPHIVVGTPGRT
MALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLSKDIR
TTCKKFMQSPLEIYVDDETKLTLHGLQQYFLKLDEKEKNRKLNDLLDNLEFNQVCIFVKS
VARATQLDALLQECNFPSICIHSALPQAERISRFQQFKAFEKRILVATDIFGRGIDVERV
NVVINYDAPADADSYLHRVGRAGRFGTKGLAISFVSSEGDQEVLQKIQERFTVAIPTLPE
TVDPATYMTS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacctgacgaagaagagctcgttgattacgacgaggccgctgaggaaaccttc
gcccccgctaccaccaccgccaccaacggtgacaaggccgacggtgacaagaagggttct
tatgtcggtattcactcgacaggtttcagagatttcctcttgaagcccgagttgcttcgt
gctatctctgatctcggtttcgagcatccctcagaagtgcaacaagaatgtattcctcag
gctatcctcggtaccgacgttctctgtcaggccaagtccggtatgggtaagaccgctgtc
ttcgtccttgccgccttgcagcaaatcgagcccgtggatggtgaagtgtctatcgtgatt
ctgtgtcacacccgagagcttgcctaccaaatcagaaatgagtttgctcgtttctccaaa
ttcatgacaaacgtccgaaccggtgtcttctacggtggtacacccatctctgccgaccag
gagatcctcgcctccaaggagaagtgcccccacatcgttgtcggtactcccggtcgaacc
atggccctcgttagggacaagaagctcaacgccagcaaggtcaagcacttcgtcctcgac
gagtgtgacaagatgctcgaacaacttgacatgcgacgagacgttcaagagatcttccga
gccacccctcaccacaagcaggttatgatgttctccgccaccttgtccaaggacatccga
acaacatgcaagaagttcatgcagagcccgctcgagatctacgtcgacgacgagaccaag
ttgactctccacggtcttcaacaatacttcctcaagctcgatgagaaggagaagaacagg
aagctcaacgacttgttggacaacttggagttcaaccaggtctgtatcttcgtcaaatcc
gttgcccgagctactcaactcgacgctctgctccaagagtgcaacttcccttctatctgc
atccactcagccttgcctcaagcggagcgtatttctcgattccagcaattcaaggctttc
gagaagcgaattctcgttgccaccgacatcttcggtcgaggtatcgatgttgagcgagtc
aacgttgttatcaactacgacgcccccgccgatgccgactcttacctccaccgagtcggg
cgtgctggtcgattcggtaccaagggtctcgctatctcattcgtctcaagcgaaggcgac
caggaggttctgcagaagatccaagagcgattcaccgtcgccatccctacacttcctgag
actgttgaccccgctacgtacatgacttcgtag
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