Kwoniella shandongensis: 43590243
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Entry
43590243 CDS
T11156
Symbol
CI109_102731
Name
(RefSeq) uncharacterized protein
KO
K07573
exosome complex component CSL4
Organism
ksn Kwoniella shandongensis
Pathway
ksn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
43590243 (CI109_102731)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksn03019
]
43590243 (CI109_102731)
Messenger RNA biogenesis [BR:
ksn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
43590243 (CI109_102731)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
43590243 (CI109_102731)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
RRP4_S1
ECR1_N
Motif
Other DBs
NCBI-GeneID:
43590243
NCBI-ProteinID:
XP_031859671
UniProt:
A0A5M6BVG2
LinkDB
All DBs
Position
5:complement(join(62962..63056,63129..63210,63562..63744,64001..64012,64075..64131,64256..64408))
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AA seq
193 aa
AA seq
DB search
MASSSSQILLPGQPIPNSLVAPPVPQLGAGVYEYGGKILASIVGRPKREGAVVSVVGREE
SGNTPDVGSIVIGTVTRLSPLQAHITLTISNNRPLPESSEEFTGVIRIGDVRLTERDKIK
LGECFRLGDLVKASVLSLGDARSYYLSTAANELGVVYATSESGNPLVPVSYQEMEDESTG
KREKRKVAKPEGI
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggcatcctcttcatcgcaaatactattaccgggtcaaccgatccctaattcgttggtc
gctccgcctgtacctcagctcggagcgggtgtgtacgaatatggtggaaagatattggct
agtatcgttgggagaccaaagagagaaggagcggtcgtcagtgtcgtaggtagggaagaa
agtggaaatacaccagatgtggggtctattgtaattggaacagtcacccgattatccccc
ttacaagcgcatatcaccttgacgatatcgaacaaccgtcctctccccgaatcatctgaa
gaatttacaggtgtcatacgtatcggcgatgtacgattgacagagagggacaagataaag
ctaggagaatgttttaggttgggagatctggtcaaggctagtgtgctgagtctgggggat
gcgcgaagttactatctctcaacagctgccaacgagctaggcgtagtgtacgccacttca
gaatcaggcaatccccttgttcccgtcagttatcaagagatggaagatgagtcgacggga
aagagggagaagagaaaggttgcaaagccggagggtatatag
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