Kwoniella shandongensis: 43590674
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Entry
43590674 CDS
T11156
Symbol
CI109_101959
Name
(RefSeq) uncharacterized protein
KO
K03679
exosome complex component RRP4
Organism
ksn Kwoniella shandongensis
Pathway
ksn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
43590674 (CI109_101959)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksn03019
]
43590674 (CI109_101959)
Messenger RNA biogenesis [BR:
ksn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
43590674 (CI109_101959)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
43590674 (CI109_101959)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
DUF5949
Motif
Other DBs
NCBI-GeneID:
43590674
NCBI-ProteinID:
XP_031859185
UniProt:
A0A5M6BTW5
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All DBs
Position
3:complement(join(1655701..1655913,1655995..1656207,1656273..1656350,1656435..1656627,1656752..1656853,1656919..1657124))
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AA seq
334 aa
AA seq
DB search
MFSVTTLPPSSTLSFADDIPSSHRKHPAELDAMDVDDGGFEDEYGGAGPSKRTVVTPGEV
ITSSKEYMRGHGTYVEEVNVVSSVTGTIERVNKLISVKPLRSRYNPEVGDLVIGRINEVG
PQRWRVDANGRQDAVLMLSSVNLPGGVQRRKIESDALKMREFLAEGNLLVAEVQSLLGDG
VMSLHTRSLKYGKLRNGFLLTVPPQLIRRLKSHFHHIPAPCGPTGVDIILGLNGFVWVSS
GTSQERREGGEGFDAEGVYSDKNDDITPEGRQAVSLIANLIKLLAREGVPLTETLINEAY
SWAAKNVPGDGPLSDRDGERMLLEVVGLDIHHRA
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgtcactaccttaccgccctcttctactttatcgttcgccgatgacatccct
tcatctcatcgaaaacaccccgcagagctcgatgctatggacgtcgatgatggtggtttc
gaagatgaatatggaggtgcgggacctagtaagaggacagtcgtcactccaggagaagtg
atcaccagctccaaagaatatatgaggggccacgggacatatgtcgaggaggtcaatgtc
gtttcgtcggtgacggggacgatcgagagagtgaacaagctcatttcggtcaagccatta
cgatcgaggtacaaccccgaagtgggcgacttggtcatcgggcgaatcaatgaagtcggt
cctcaacgatggcgagtcgacgcgaacggtagacaagatgcagttttgatgttgtcaagt
gtcaacttgcccggcggtgtgcagaggagaaagattgaatcggacgctttgaagatgaga
gagtttttggcagaagggaatctactggtcgcagaggtccaatcgttgcttggtgacggt
gttatgtctctacatacccgatcgttgaaatacggcaaactacgaaacggcttcctcctc
actgttcctccccaacttatccgtcgtctcaaatcacacttccaccacatcccagcacca
tgcggtcccactggcgtcgacatcatcctgggactgaatggattcgtatgggtcagtagt
ggaacgtctcaagaacgaagagagggaggtgaaggtttcgatgcagagggagtgtatagc
gataagaacgatgatatcacaccggaagggagacaagccgtatcgttgatcgccaacctg
attaaactcctcgcgagggagggtgtccccctcacagagacattgatcaacgaggcgtac
agttgggcagcgaagaatgtaccgggcgatggaccgctgagcgaccgagatggagagagg
atgttactagaagtcgttggattagatattcaccatcgcgcatga
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