KEGG   Kwoniella shandongensis: 43591126
Entry
43591126          CDS       T11156                                 
Symbol
CI109_102550
Name
(RefSeq) uncharacterized protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ksn  Kwoniella shandongensis
Pathway
ksn03018  RNA degradation
ksn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ksn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    43591126 (CI109_102550)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    43591126 (CI109_102550)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ksn03019]
    43591126 (CI109_102550)
   03041 Spliceosome [BR:ksn03041]
    43591126 (CI109_102550)
Messenger RNA biogenesis [BR:ksn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     43591126 (CI109_102550)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     43591126 (CI109_102550)
Spliceosome [BR:ksn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    43591126 (CI109_102550)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 43591126
NCBI-ProteinID: XP_031858740
LinkDB
Position
4:complement(join(1415348..1415484,1415544..1415576,1415654..1415750,1415925..1416074,1416208..1416249,1416304..1416306))
AA seq 153 aa
MLPLSLLNAAQGKPMLVELKNGVTFNGHLVECDNFMNVTLREVYQTSADGERFWKMKEMF
IKGNIIKYFRIADSILDTAMEEQEKQRAANRQRGGGRGGRGGQTNARGGRGGPPARGGPP
GRGGGPGGGRGGGGPGRGGRGGGGGRGGPRGGA
NT seq 462 nt   +upstreamnt  +downstreamnt
atgctccccctatccctactcaatgccgctcaaggcaaaccgatgctggtcgagctcaaa
aacggcgtaacgttcaacggacatctggtcgaatgtgacaactttatgaacgtgacgctg
agagaagtgtatcagacttcagcggatggtgaacggttttggaaaatgaaggagatgttt
atcaaggggaatattataaaatactttcgtatagcagactcgatcctcgatacagcgatg
gaagagcaggagaaacaaagagcagctaacagacaacgaggtggtggacgaggtggacga
ggaggacaaacgaatgcgcgaggaggccgaggcggtccaccagcacgtggaggtccacca
ggacgaggaggcggacccggtggtgggagaggaggtggtggtccaggacgaggcggacgt
ggtggaggtggtgggagaggtggtcctcgaggaggtgcatag

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