Kwoniella shandongensis: 43591436
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Entry
43591436 CDS
T11156
Symbol
CI109_100892
Name
(RefSeq) uncharacterized protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ksn Kwoniella shandongensis
Pathway
ksn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ksn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
43591436 (CI109_100892)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksn03021
]
43591436 (CI109_100892)
03019 Messenger RNA biogenesis [BR:
ksn03019
]
43591436 (CI109_100892)
Transcription machinery [BR:
ksn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
43591436 (CI109_100892)
Messenger RNA biogenesis [BR:
ksn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
43591436 (CI109_100892)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH_4
zf-CCCH
zf-CCCH_2
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
43591436
NCBI-ProteinID:
XP_031858500
UniProt:
A0A5M6BU82
LinkDB
All DBs
Position
2:join(561912..562401,562470..562562,562618..562677,562741..564131)
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AA seq
677 aa
AA seq
DB search
MSVPLPSPSPLSPSSAKPIPSRSRPTPISINSPHGTSPSSPGPAGGGATAASWKRPAGSS
SVSRSFVTDDNWRERTAGSVGAGSFSGGIKSASGNGNGNGSGNGSAGLSGGKGPERTVGG
FGFEKREVKSAGLSGSSGAAVSGLSREKDKKEKKEEDKDGDGKAAALSHVPCRFFKAGAC
TAGDSCPFSHAAPDSAKREVCQWFLKGNCKFGHKCALAHVRPGEPMSMDRKNKKAAQLEA
RERADSVGSNGLVSSPANGSAISSGRKIPSANEEHIASPVPIKSALSSSMQSPPAGRLPS
SPLREPFGPPSGAQLNSPSAGFAHARAIPTFASSPSRPSPLSASFGANGSVPGPLSLKNS
ATNPLGSPLRPPVTAGAAVFSSSFSHASAGLDRAAQPVPLSASFAGDGAKLQKSIWARSD
GPAEPLSPRRPIPRPSKSTADVFIDEEDHGEDFLPSSLSDLLTPQERARRMSRRDSQDSF
SASPSHAAFVSPVWNGERLAQSAGPTMGPGGFLQSLWSAEGEDARKSRHGAEDDFAFGPA
TAQPQGQRTSLLTQQRSPTQTTPTSPIRNIPQNRGPTTGEPYLIRNLGDPSSPSSRALQE
HAPGQSLPGGLASALSRLHLHGPRSPSGLGGALAAGVASGAGSKALGGIARSETSDNGET
TPPHVGEHDEGLFAMDG
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttccactcccatcaccatcaccgctctctccatcttctgccaaacctatccca
tcacgctctcgtcccactcctatctccatcaactcgcctcacggtacatccccctcatcc
cccggccctgcaggcggtggcgcaaccgccgcatcgtggaaacgacctgctgggtccagc
tccgtcagtcgctcgttcgtcactgacgataattggcgtgagagaacagctggatcagtt
ggtgcaggaagtttcagcggtggtatcaagtctgcaagcggtaacggtaacggcaatggg
agtgggaatggcagtgctggtctatctggtggaaaaggtcctgagagaactgtaggtgga
ttcggattcgagaagagagaggtcaagtctgcgggattgagcggatccagtggtgccgct
gtgagcggtttgagcagagagaaggacaagaaggagaagaaagaagaagacaaagatgga
gatggtaaagctgctgctttaagtcacgtcccttgtcgattcttcaaggcgggcgcttgt
accgctggcgatagctgtccattttctcacgccgcacctgattcggccaagcgagaggtc
tgtcaatggttcttgaaggggaactgcaagtttggacacaagtgtgccctcgctcacgtt
cgtcccggagaacccatgtctatggataggaagaacaagaaagctgcgcaactggaagct
cgcgaacgtgccgactccgtcggttccaatggcttggtatccagtcccgccaatggaagt
gctatctcaagcggaaggaagattccttcggcaaacgaagaacatatcgcttctcctgtt
ccgatcaaatcagctctctcgtcctcgatgcagtctcctccagctggccggttgccctca
tcgcctcttcgagagcccttcggaccaccttctggcgctcaactgaactcgccctctgct
gggttcgcccacgctcgcgccatccctacattcgcatcaagcccaagtcggccatcgccc
ttgtctgcttcctttggtgcaaatggttccgttcccggtccattatcgctaaagaacagt
gcgaccaatccgttgggctctcctttgcggcctcctgtcaccgctggcgctgccgtgttt
agcagctctttctcgcatgcttctgccggtcttgatcgagctgcccaacctgttcctctc
tcagcttcctttgcaggtgatggtgcgaagcttcagaaatccatttgggctcgatctgac
ggtcctgctgagcctctgtcgcctcgacgaccgattcctcgaccgtccaagtccaccgcg
gatgtcttcatcgacgaagaagaccacggtgaggacttcctaccgtctagcttgtcggac
ctattgactccgcaagaacgagctcgacgaatgtcccgacgtgattctcaagattcgttc
tccgcttctccctcccatgccgctttcgtgtcacccgtgtggaacggagagcgactcgcc
caatctgctggacccaccatgggacccggtggattcctacaatcactctggtcagctgaa
ggagaagatgcgcgcaagtctcgacatggcgctgaagatgacttcgcgtttggtcccgcg
acggctcaaccacaaggacaacgaacatcacttctcacccaacagagatctcctacccaa
accactcccaccagtcctatccgaaacatcccacagaaccgaggtccgactaccggcgaa
ccatacctcatccgcaatctcggagacccatcttccccttccagcagggcgctacaagaa
catgccccgggtcagtcattgcccggtggactggcttctgctctatcgagattgcatctc
catggacctagatcgcctagtggtctgggcggtgctctagccgctggagtcgcatcagga
gcgggatcgaaggctctgggaggtatcgctcggtctgagacgagtgataacggcgaaacc
acacctccacacgtcggcgaacacgatgaaggcttgtttgctatggatggttaa
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integrated database retrieval system
