Candidatus Kuenenia stuttgartensis: KSMBR1_1889
Help
Entry
KSMBR1_1889 CDS
T05435
Symbol
rne
Name
(GenBank) strongly similar to ribonuclease E (RNase E)
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kst
Candidatus Kuenenia stuttgartensis
Pathway
kst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSMBR1_1889 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kst03019
]
KSMBR1_1889 (rne)
03009 Ribosome biogenesis [BR:
kst03009
]
KSMBR1_1889 (rne)
Enzymes [BR:
kst01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KSMBR1_1889 (rne)
Messenger RNA biogenesis [BR:
kst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KSMBR1_1889 (rne)
Ribosome biogenesis [BR:
kst03009
]
Prokaryotic type
rRNA processing factors
KSMBR1_1889 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
a_DG1_N2
HycH
Motif
Other DBs
NCBI-ProteinID:
SOH04388
UniProt:
Q1PY04
LinkDB
All DBs
Position
MBR1:2066790..2068319
Genome browser
AA seq
509 aa
AA seq
DB search
MEKTTKTKTRMLINAIEPEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNL
EAAFVDIGLKKNGFLHASDVLVPSEGKNQGEEADPPPVRHHRIRDVLQQGKEILVQVTKE
SLGTKGPSLTTYISLPGRYLVLMPEVKRYGVSKKITEEEERQRLKKILESLNPPKNIGFI
VRTAGVQQTKRELQKDFHYLLKLWKNICKKSKEIDAPGVIYQESDLVIRVIRDIFSQDIN
EIIVDSESVFKRTREFLRIIMPKYEKQLKFYNKEKPLFHNFGIENAIEEINSRKIPLLHG
GSIVLEQTEALVAIDVNSGKYKGKCDPEETAFRTNMIAAKEIARQIRLRDLGGVIVIDFI
DMRNEKHIQAVEKAIADSLKRHRARTKMLKMSKFGTIEITRQRIRPSLRDVLFEECKFCC
GTGYAKTVESLCLNIMRDVKFALHLPQVVRIEITSNNDVVDYLQNQKRKQMAEIEDAYNK
KIVIFTDTANEYGKIDIRYFDNKGEPVTV
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaacaacgaaaacgaaaacaaggatgcttataaatgcgattgaacctgaagag
tgtcgtatcgctatattagaaaacaacattcttgaggaattgtatattgaaagaagctca
cgtgagcagattgcagggaatatttacaaaggaagagtggttaatatagaaccaaacctg
gaagcggcatttgttgatatagggctcaaaaaaaacggatttctccatgcttcggatgtg
ttggttccgtcagaaggaaagaatcagggagaagaagcggatcccccccctgtaagacac
catcggatacgcgatgttttgcaacaaggtaaggagatacttgttcaggtaacaaaggaa
agccttgggacaaagggacccagtttgaccacctatataagtttgccgggcagatatctg
gttttaatgccggaagtaaagcgttacggcgtttccaagaaaataaccgaggaagaagag
agacaaaggttaaagaaaatccttgaaagcttaaatcccccgaagaatattggttttata
gttcgaaccgccggtgtacaacaaacaaagagagaactacagaaagattttcattatctg
ttgaaactatggaagaatatctgtaaaaagtcgaaagagattgacgcgccaggcgtaatt
tatcaggaaagcgacctggtgattcgcgtaattcgtgatatatttagccaggatataaat
gaaatcattgtagattcagaatctgtttttaagagaacacgagagttcctgcggataata
atgcctaaatatgaaaaacagcttaaattctacaacaaagagaagccattatttcataat
tttggaattgaaaatgccattgaagaaataaactcgcgaaaaattccgttgctgcatggc
ggatcaatcgttcttgaacagacagaagcattagttgcgattgatgtgaatagcggtaaa
tataaagggaaatgcgatcccgaagagacggcgttcaggacgaatatgattgcggcaaaa
gaaattgcacgccaaataagactgcgggatttagggggagtaattgttattgattttatc
gatatgcggaatgaaaaacatatccaggcggttgagaaggcaattgcggattcgttgaag
aggcatcgcgcaagaacaaagatgctgaaaatgtcaaaatttggtacaattgaaatcacc
agacagagaatccggccaagtctgagagacgttttgtttgaagaatgcaaattttgctgc
ggaacaggctacgcaaaaacagtagaatctctgtgtttaaatatcatgagagatgtaaaa
tttgctttacatttacctcaagtcgtaaggattgaaataacttcaaataatgacgtagtc
gattatttacagaatcagaaaagaaaacaaatggcggagattgaagatgcgtataacaaa
aaaatagttatttttaccgatacagcaaatgaatatggcaaaatagatattcgttatttt
gataataagggtgaacccgttaccgtataa
DBGET
integrated database retrieval system
