Komagataeibacter sucrofermentans: ACM0P6_06210
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Entry
ACM0P6_06210 CDS
T11177
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ksu Komagataeibacter sucrofermentans
Pathway
ksu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ksu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACM0P6_06210 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksu03021
]
ACM0P6_06210 (rpoC)
03400 DNA repair and recombination proteins [BR:
ksu03400
]
ACM0P6_06210 (rpoC)
Enzymes [BR:
ksu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACM0P6_06210 (rpoC)
Transcription machinery [BR:
ksu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACM0P6_06210 (rpoC)
DNA repair and recombination proteins [BR:
ksu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACM0P6_06210 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XOO51594
LinkDB
All DBs
Position
complement(1272530..1276723)
Genome browser
AA seq
1397 aa
AA seq
DB search
MNELMKILGQGGQAMTFDQIKIQLASAEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMVDMTLKDLEKILYFESYVVLEPGTSPLKQYSLLTEDQYLDVMDEHGDEGIEVG
IGAEAIKKILERIDCKVEKEELRLELKETTSEAKRKKLVKRLKLVEAFADSESRPEWMIL
DLVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLETPEFRATPDKNSYDDKGQVTVTG
APSFSSVGEVEYALSTGAVKLHDKIRARIEGFDAEGKTVRETVVTTPGRMLVAQILPRNQ
ALPFSLINRQLTKKIVSDVIDAVYRHCGQKECVIFCDRLMGLGFRHAARSGISFGKDDMI
VPVEKKELVDRTATEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMMKEISKQE
IGKPTNSVWMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLDYFT
SSHGARKGLADTALKTANSGYLTRRLVDVAQDSIIVEEDCGTERGLTVRAVMDGGEVVAS
LSERMLGRTLAADVLDPATGKVLFPRNTLIEEAEAEQIEKAGVESLLIRSVLTCDSRVGV
CGHCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSMVEASR
DGKVTIRNKNVVHNSQNVPIVMSRNCEILLTDDRGTERARYRVPYGARLLVEDGAEVARG
QKMAEWDPYTLPIITEQPGKVEYLDLIDSITLVERMDEVTGLTSKVVVDYKQASKGIDLR
PRLQLKDANGDVVKLANGNDARYFLSPDSLLSVENGAQVNAGDVLARIPREGSKTRDITG
GLPRVAELFEARRPKDHAIISETEGRVEFGKDYKSKRRVIVKNDETGEETDYLIPKGKHV
SVQEGDFVQVGDPLVDGPRVPHDILKVLGVEALSDYLVNEIQDVYRLQGVKINDKHIEVI
VRQMLQKVEILEPGDTTYLIGETVDRIEYEEENAKRLNLGEQPAVAMPVLQGITKASLQT
QSFISAASFQETTRVLTEAATAGKKDTLNGLKENVIVGRLIPAGTGSVMNKLRAVAAGED
KQRLAKARAAVPPKAAE
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaactcatgaagatccttggtcagggcggccaggccatgacctttgaccagatc
aagatccagctggcttcggccgagcagatccgttcgtggtcctatggcgagatcaagaag
cccgagaccatcaactaccggaccttcaagccggagcgtgatggcctgttctgcgcgcgg
atttttggtccgatcaaggactacgaatgcttgtgcggcaagtacaagcggatgaaattc
cgcggcatcatctgcgaaaagtgcggcgttgaagtgacgctggccaaggtgcgccgtgag
cgcatgggccatatcgagctggccagcccggttgcgcatatctggttcctgaagtccctg
cccagccgtatcggcctgatggtcgacatgacgctgaaggatctggaaaagatcctgtat
ttcgagagctatgtcgtgctcgagcccggcacctcgccgctcaagcagtacagcctgctg
acggaagatcagtaccttgatgtcatggacgagcatggcgacgagggcatcgaggtcggt
attggcgcggaagcgatcaagaagatcctcgagcgcatcgactgcaaggtcgagaaggaa
gaactgcgcctcgagctgaaggaaaccacttccgaagccaagcgcaagaagctggtcaag
cgcctgaagctggtcgaggccttcgccgacagtgaatcgcgcccggaatggatgatcctg
gacctcgtgccggtcattccgcctgaactgcgcccgctggtgccgcttgatggtggccgt
ttcgccacgtccgacctgaacgacctgtatcgtcgcgtcatcaaccgtaacaaccgcctc
aagcggctgatcgaactgcgtgcgccggatatcatcgtgcgtaacgaaaagcgcatgctg
caggaatcggtcgatgcgctgtttgataacggtcgccgtggccgcgccatcaccggcgcc
aacaagcgcccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtggtgggcccg
gagctgaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctactccaagctggaaaaatacggtcacgccaccaccatcaaggctgccaagcgc
atggtggaaaaggaacgtcccgaagtgtgggacatccttgaagaggtgatccgcgagcat
ccggtcatgctcaaccgtgcgcctacgctgcaccgtctgggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggctatccagctgcacccgctggtctgcaccgcgttcaacgcc
gacttcgatggcgaccagatggccgtgcacgtgccgctgagcctcgaggcacagcttgaa
gcccgcgtgctgatgatgtcgaccaacaacatcctcagcccggccaacggcaagcccatc
atcgtgccgtcgcaggatatcgtgctcgggctgtattacctcagcctcgagacgcccgaa
ttccgcgcgacgcccgataagaacagctacgacgacaaggggcaggtgaccgtaaccggc
gcaccgtccttctcgagcgttggcgaagtggaatacgcgctgagcacgggcgcggtgaag
ctgcacgacaagatccgcgcgcgcatcgaaggctttgatgccgaaggcaagaccgtgcgt
gagacggtggtgaccacgccgggccgcatgcttgttgcccagatcctgccgcgcaaccag
gcgctgccgttctcgctgatcaaccgccagctgaccaagaagatcgtgtcggacgtgatc
gatgcggtttaccgtcactgcggccagaaggaatgcgtgatcttctgtgaccgcctgatg
ggccttggcttccgtcacgccgcgcgttcgggcatttccttcggcaaggacgacatgatc
gttcccgtcgagaagaaggaactcgtggaccgcaccgccaccgaggtgaaggagttcgag
cagcagtatcaggacggtctgatcaccgctggcgagcgctacaacaaggtggtcgacgcc
tggtcgcgctgcaccgatgaagtgcaggccgcgatgatgaaggagatctccaagcaggag
atcggcaagcccaccaactcggtgtggatgatgagccactccggtgcccgtgggtcgcca
gcgcagatgaagcagcttgccgggatgcgtggcctgatggccaagccgtcgggtgagatc
atcgaacagccgatcatcgccaacttcaaggaaggcctgtcggttctcgattacttcacc
tccagccacggtgcgcgtaagggcctggccgataccgcgctcaagaccgcgaactcgggt
tacctgacccgccgcctcgttgacgtggcgcaggacagcatcatcgtcgaggaagattgc
ggcaccgagcgtggcctgaccgtgcgtgcggtcatggatggcggcgaagtcgtggcctcc
ctgtccgagcggatgcttggccgcacgctggccgccgacgtgctggacccggcaacgggc
aaggtgctcttcccgcgcaatacgctgatcgaggaagccgaggccgagcagatcgagaag
gcgggggtcgaaagcctgctgatccgctccgtgctgacctgtgacagccgcgtgggcgtg
tgtggccactgctatggccgtgaccttgcacgcggcacgccggtcaacatcggtgaggcc
gtgggcgttattgcagcccagtcgatcggtgagccgggcacacagctgaccatgcgtacc
ttccatatcggtggtgcggcgcagcgtggcgccgagcagtcgatggtcgaggcctcgcgt
gatggcaaggtgacgatccgcaacaagaacgtggtgcataacagtcagaacgtgcccatc
gtcatgtcgcgtaactgcgagatcctgctgacggacgaccgcggcaccgaacgtgcccgc
taccgcgtgccctatggtgcgcgcctgctggtcgaggacggcgccgaggtggcccgtggc
cagaagatggccgagtgggatccgtacaccctgccgatcatcaccgagcagccgggtaag
gtggaatatctcgacctgatcgactccatcaccctggtggagcggatggatgaggtgacc
ggcctgacctcgaaggtggtcgtggattacaagcaggcttccaaggggatcgacctgcgt
ccgcgcctgcagctcaaggatgccaacggcgacgtggtgaagctggccaacggcaacgac
gcccgctacttcctgtcgcctgactcgctgctctcggtcgagaacggcgcccaggtcaac
gcaggtgacgtgctggcgcgtatcccgcgtgaaggctccaagacgcgtgacattaccggt
ggtctgccgcgcgtggcggaactgttcgaggcccgtcggccgaaggatcacgccatcatc
tcggaaaccgagggacgcgtggaattcggcaaggactacaagtccaagcgtcgcgtcatc
gtcaagaacgacgagacaggcgaggagacggattaccttatccccaagggcaagcacgtg
tccgttcaggaaggcgactttgtccaggtgggcgatccgctcgtcgatgggccgcgcgtg
ccgcatgacatcctgaaggtgctgggtgtcgaggcgctgtcggactacctcgttaacgag
atacaggacgtgtaccgactgcagggcgtgaagatcaatgacaagcatatcgaagtcatt
gttcgtcagatgctgcagaaggtggaaattcttgagccgggcgatacgacctacctgatc
ggtgagacggtggaccgtatcgaatacgaggaagagaatgccaagcgcctgaaccttggt
gaacagcctgccgttgccatgccggtgctgcagggcatcaccaaggcctcgctgcagacg
cagtccttcatctcggcggcctccttccaggagaccacccgtgtccttaccgaggccgct
acagcgggcaagaaggatacgctcaacggcctcaaggagaacgtcatcgtcggccgcctg
atccccgcagggacgggcagcgtgatgaacaagctccgcgcggttgccgcgggcgaggac
aagcagcgcctcgccaaggcccgcgctgccgtgccgcccaaggcggccgagtaa
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