Kosakonia styphnolobii: Q5705_03580
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Entry
Q5705_03580 CDS
T11811
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ksy Kosakonia styphnolobii
Pathway
ksy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ksy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Q5705_03580 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksy03400
]
Q5705_03580 (sbcB)
Enzymes [BR:
ksy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Q5705_03580 (sbcB)
DNA repair and recombination proteins [BR:
ksy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Q5705_03580 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Q5705_03580 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Q5705_03580 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WLI77651
LinkDB
All DBs
Position
726621..728045
Genome browser
AA seq
474 aa
AA seq
DB search
MSDTPATPTFLFHDYETFGTSPALDRPAQFAALRTDADFNVIGEPEVFYCKPADDYLPQP
EAVLITGITPQQARAKGENEAAFAKRIHALFTVPHTCVVGYNNVRFDDEVTRNIFYRNFY
DPYAWSWQNHNSRWDLLDVMRACYALRPDGINWPENEEGLPSFRLEHLTKANGIEHSNAH
DAMADVYATIAMAQLVKAKQPKLFEYLYSHRSKQKLATLIDVPQMKPLVHVSGMFGAWRG
NTSLVAPLAWHPENRNAVIMVDLAGDMSPLLELDADALRERLYTPKADLGEDAAVPVKLV
HLNKCPVLAQANTLREQDAGRLGINRQQCFDNLQILRNNPQVREKVLAIFADAEPFVPSD
NVDAQIYNGFFSDADRAAMKILLETDPRNLPALDITFADARIEKLLFNYRARNFPGTLDE
NEQQRWLAHRRNFLTPEYLQRYAEELQALFQQYEGDSEKQALLKALWQYAEEIV
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgataccccggcaacccccacttttctctttcacgattatgaaacgttcggtacc
agcccggcgctggatcgaccggcacagttcgctgccctgcgcaccgacgccgatttcaat
gttattggcgagccggaagtgttctattgcaaaccggcggatgactacctgccgcaacct
gaagcggtactgataaccggcatcacgccccagcaagcccgcgccaaaggcgaaaacgaa
gccgcattcgctaaacgcattcatgcgctgtttaccgtgccccatacctgcgtggtcggt
tacaacaatgtgcgttttgacgacgaggtgacgcgcaatattttttaccgcaatttctac
gatccctacgcctggagctggcaaaaccacaattcccgctgggatctgctggatgtgatg
cgcgcctgctacgccctgcgcccggacggcatcaactggccggaaaatgaagagggcctg
ccgagttttcgcctggagcatctgaccaaagccaacggcattgaacacagtaacgcgcac
gatgcaatggccgatgtgtacgccactattgcgatggcgcaactggtaaaagcgaagcag
ccaaagctgtttgagtacctctacagtcaccgcagcaagcagaagctggcaacgttaatt
gatgtgccgcagatgaagccgctggtgcatgtttccggcatgttcggtgcctggcgcggc
aacaccagtttggtggcaccgctggcatggcacccggaaaaccgcaatgcggtgattatg
gtggatctggccggtgatatgtcacccctgctggaactggacgccgatgcgctgcgcgaa
cggctctacacgccaaaagcggatctgggcgaggacgcggcggtgccggtcaagctggtg
catctgaataaatgcccggtgctggcgcaggccaacacgttacgtgagcaggatgccggg
cggctgggcattaaccgacagcagtgttttgataatttgcagatcttgcgtaacaacccg
caggtgcgggaaaaagtgctggcgattttcgccgacgccgagccgtttgtgccttcagac
aatgtggatgcgcaaatctacaacggcttttttagtgatgctgaccgtgcggcgatgaaa
atcctgctggaaaccgatccgcgcaacctgcccgcgctggatatcacctttgccgacgcg
cgaattgaaaaactgctgtttaactaccgggcgcgcaacttccccggcacgctggatgag
aacgagcagcagcgctggcttgctcatcgtcgtaacttcttaacgccggagtatttgcaa
cgctacgccgaggagttgcaggcgctgttccagcaatacgaaggggacagtgaaaagcag
gcgctgttaaaagcgctgtggcaatacgccgaggagatcgtttaa
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