Kosakonia styphnolobii: Q5705_14175
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Entry
Q5705_14175 CDS
T11811
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ksy Kosakonia styphnolobii
Pathway
ksy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ksy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q5705_14175 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksy03021
]
Q5705_14175 (rpoD)
Transcription machinery [BR:
ksy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q5705_14175 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
HTH_SUN2
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
WLI75732
LinkDB
All DBs
Position
complement(3010556..3012397)
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AA seq
613 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEQARLSDLITGFVDPNAEEDMAPTA
THVGSELSSEEMDDDEDEEEEDDDDSDDDNSIDPELAREKFAELRTQYELTRDTIKAKGR
SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPKK
NFITLFTGNETSETWFNAALAMNKPWSEKLNEVADDVQRGLAKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgatcaacgatatgggcatccaggtgatggaagaagcaccg
gatgccgatgatcttttgctggccgaaaactccaacaacacagacgaagatgcggaagaa
gctgctgcgcaggtgctttccagcgttgagtctgaaatcggacgaactaccgacccggtg
cgtatgtacatgcgcgaaatgggcaccgttgaactgctgacccgtgaaggcgaaatcgac
atcgccaaacgtatcgaagacgggattaaccaggttcagtgctccgttgccgagtacccg
gaagcgatcacctatttgctggaacaatacgaccgcgttgaagctgaacaagctcgcctt
tccgacttgatcactggctttgtcgatcctaacgctgaagaagatatggcaccgactgcc
acccacgtcggttctgagctctccagcgaagagatggatgatgacgaagatgaagaagaa
gaagacgatgatgacagcgacgatgacaacagcatcgatcctgagctggcacgtgagaaa
tttgccgaactgcgcacgcagtacgaactgactcgcgacacgattaaagccaaaggacgc
agccacgctgccgcccaggaagagatcctcaagctgtctgaagtcttcaagcagttccgc
ctggtaccgaagcagttcgattacctggtaaacagcatgcgcgtcatgatggatcgcgtg
cgcacccaggaacgcataatcatgaagctgtgcgttgaacagtgcaaaatgccgaagaaa
aacttcatcacgctgtttaccggcaatgaaaccagcgaaacttggttcaacgccgcgctg
gccatgaacaaaccgtggtcagaaaagctgaacgaagtggcagacgacgttcaacgcggc
ctggcgaagctacagcagatcgaagaagaaactggcctgaccattgagcaggttaaagac
atcaaccgtcgtatgtctatcggcgaagcgaaagcgcgtcgtgcgaagaaagagatggtg
gaagcgaacttgcgtctggttatttctatcgccaagaaatataccaaccgtggtctgcaa
ttcctcgatctgattcaggaaggcaacatcggcctgatgaaagcggtagataagttcgaa
tatcgccgtggttacaaattctccacctatgcaacctggtggatccgtcaggccattacc
cgctccatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagactatc
aacaagctcaaccgtatttctcgccagatgcttcaggaaatggggcgcgagccgacgccg
gaagagctggctgaacgtatgctgatgccggaagataaaatccgtaaggtgctgaaaatt
gccaaagagccgatctccatggaaacaccgattggtgatgatgaagattcgcatctgggt
gattttattgaggatactaccctcgaactgccgttggactctgcaaccaccgagagcctg
cgtgctgcgacgcacgacgttctggctggtctgaccgcgcgtgaagcgaaagtgctgcgt
atgcgtttcggtattgatatgaacaccgaccatacgctggaagaagtgggtaaacagttc
gacgttacccgcgaacgtatccgtcagattgaagcgaaggcgctgcgtaaactgcgccat
ccgagccgttctgaagtgctgcgtagcttccttgacgattaa
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