Kutzneria sp. CA-103260: JJ691_02510
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Entry
JJ691_02510 CDS
T08943
Symbol
lig_1
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kut
Kutzneria sp. CA-103260
Pathway
kut03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JJ691_02510 (lig_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kut03400
]
JJ691_02510 (lig_1)
Enzymes [BR:
kut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JJ691_02510 (lig_1)
DNA repair and recombination proteins [BR:
kut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JJ691_02510 (lig_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QUQ62539
LinkDB
All DBs
Position
283689..284717
Genome browser
AA seq
342 aa
AA seq
DB search
MWLAGELTFWGDPGSSRRYSVRATVNGVARRSAVPDPVEPMLAGSDGGTLPDGEAWSYEF
KWDGYRAVMRVAEDGTTRLNSRNLNDLTARYVEVTEPGLTVSAVLDGEIVALDRRGVPDF
NLLQNRAVKVQYFAFDLLRLGNNDLTGEPYRVRRALLAELAPGNPRISVTPYYDHADVDP
EQLLQIAANAGLEGLIAKVTDSRYHPGRRSPEWLKHPFWHTQEVVIGGWRPGQGRRDGTI
GALLLGAYDDTGLRYIGDVGTGFTDQALKDLLAELEPLGQKQSPFTNPVPRDRARNVRWL
RPERVGEVEYRKFTVDRVLRHSTWRGLRPDRRPDEVRCPELP
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
ttgtggttggcgggcgagctcacgttctggggcgaccccggaagctcgcgccgctactcc
gtccgggctaccgtgaacggcgtggcgcgacggtcggcggtgccggacccggtggagccg
atgctggccggctccgacggcggcacgctgccggacggcgaggcctggtcgtacgagttc
aaatgggacggataccgggcggtcatgcgggtcgccgaggacggcacaactcggctgaac
agccgcaacctcaacgatttaaccgccaggtatgtggaagtgaccgagcccgggctcacc
gtctcggcggtcctcgacggtgagatcgtggcgctggaccgccggggagtgccggacttc
aacctgttgcagaaccgggcggtcaaggtgcagtacttcgccttcgacctgctccggctg
ggcaacaacgatctgaccggggagccgtatcgggtacggcgtgcgctgctggccgagttg
gcgcccggcaaccccaggatctcggtcacgccgtactacgaccacgccgacgtcgacccg
gaacagctgctccagatcgccgcgaacgccggtctggaggggctgatcgccaaggtcacc
gactcccgttaccatccgggccgccgcagcccggagtggctgaagcacccgttctggcac
acccaggaggtggtcatcggtggctggcggcccgggcagggccggcgcgacggcaccatc
ggggcgctgctgctcggcgcctatgacgacaccggcctgcgctacatcggcgacgtcggc
acgggtttcaccgaccaggcgctgaaggacctgctggctgagctggaaccgttggggcag
aagcaatccccgttcaccaacccggtgccgcgggaccgggcccgcaacgtgcggtggctc
cggccggagcgggtcggcgaggtggagtaccggaagttcactgtggaccgtgtgctgcgg
cattccacatggcgggggctgcggccggaccgccggcccgacgaggtgcgctgccccgag
ctgccttag
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