Kutzneria sp. CA-103260: JJ691_44010
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Entry
JJ691_44010 CDS
T08943
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kut
Kutzneria sp. CA-103260
Brite
KEGG Orthology (KO) [BR:
kut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kut03019
]
JJ691_44010 (hrpA)
Enzymes [BR:
kut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JJ691_44010 (hrpA)
Messenger RNA biogenesis [BR:
kut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JJ691_44010 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
NACHT
T2SSE
AAA_25
AAA_30
SLFN-g3_helicase
AAA_23
PhoH
LysX_preATP_grasp
NTPase_1
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QUQ66673
UniProt:
A0AAT9LSJ8
LinkDB
All DBs
Position
complement(5105574..5109485)
Genome browser
AA seq
1303 aa
AA seq
DB search
MGSLPVTAAHIDLPQLMLRDEHRLRRRIDGARKIRDEAKRRAALDQIDDEVLAAQAKLAA
RVAAVPRISYPEELPVSQRRQDILDVIRDNQVVIVAGETGSGKTTQLPKICLELGRGVRG
VIGHTQPRRLAARTVAERVAEELRTELGQVVGYKVRFTDQVGDQTLVKLMTDGILLAEIQ
SDRLLSRYDTLIIDEAHERSLNIDFILGYVKQLLPRRPDLKVIITSATIDPERFSRHFGD
APIVEVSGRTYPVETRYRPVIDPEDPDADPDRDQVQAIADAVDELCAEGPGDILVFLSGE
REIRDTADALSKQDRRNTEILPLYARLSFGEQHRVFQRHTGRRIVLSTNVAETSLTVPGI
KYVIDPGNARISRYSHRLKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFESR
PEFTDAEILRTNLASVILQMIAAGLGDIAAFPFIDPPDRRNINDGIGLLQELGALDKDKL
TPIGRRLSQLPVDPRLARMVVAAEENGCVREVMVIAAALSIQDPRERPTEQQEQAQQQHA
RFRDPDSDFISFLNLWNYLREQQKELSSNQFRKMCRAEFLNYLRVREWQDIYSQLRQVVK
GQGVSVNGGELDTKGIHLSLLAGLLSHLGMKDVVTKGVVTTGSGRRGPTEYLGARGAKFA
IFPGSTLSRQQPQWVMAAELVETSRLWARTVAKIEPEWAEKLGAHLVKRNYSEPHWEAKQ
GAVIATEKVTLYGLPIVAARRINYGRIDPEVSRELFIRHALVDGEWRTNHQFFHHNRKLL
DDVDKLEDRVRRRNIKVDDETLFDFYDKRVGAEVVSVRHFDTWWKKTRREQPDLLTFDPE
MLVNESAGGITEADYPDHWTQGGVQLPLTYRFEPGRRDDGVTVRVPLPVLGQVDGDGLAW
QIPGLRLELVTSLIKSLPKQIRRNFVPAPTFAQAVVDRIGADDQHVLEAVERELRTLSGV
DIPREAWQLDQVPEHLKTTFHVVDERDRTLAEGKNLAAIKEDLRATMRAALSAAPNDIER
TGVTTWDFGTLPRSHRQAVTGYEVTTYPSLVDRGDHVDIKLLDSAAQQRAAMVLGTRRLL
LLQLPSPVKLIVRSLSNDAKLTLSRNPHGGVPALLADCVATAVDKLVADGGGPAFDQAGF
EKLLVRARQGLNETALDVVNQVRRVLNEAQAAERQLAAAKFAPDASVADIRAQIRGLVHA
DFAAEFGYQRLSDVERYLKAIQRRLDKLPENPQRDVQRTEEIAEITAEYRALLAAVPPGE
PVEKPLRTIGWMIQELRVSYFAQTLGTAYPVSEKRIYKAMDEL
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgggatcgctaccggtgactgctgcccacatcgacctgccccagctgatgctgcgcgac
gagcatcggctgcgccggcgtatcgacggcgcccgcaagatccgggacgaggccaaacgc
cgcgccgccctggaccagatcgacgacgaggtgctggccgcgcaggccaagctggcggcc
cgggtggcggcggtgccgcggatcagctacccggaggagctgccggtcagccagcgccgc
caggacatcctggacgtgatccgggacaaccaggtggtgatcgtggccggcgagaccggc
tccggcaagaccacccagctgcccaagatctgcctggagctgggccggggcgtgcgcggt
gtgatcggccacacccagccccgccggctggccgcccgcacggtggccgagcgggtggcc
gaggagctgcgcaccgagctgggccaggtggtcggctacaaggtccggttcaccgaccag
gtcggcgaccagaccctggtcaagctgatgaccgacggcatcctgctggccgagatccag
agcgaccggctgctgtcccgctacgacacgctgatcatcgacgaggcccacgagcgcagc
ctcaacatcgacttcatcctcggctacgtcaagcagctgctgccgcgccgccccgacctc
aaggtgatcatcacctccgccaccatcgacccggagcggttctcccggcacttcggcgac
gccccgatcgtcgaggtctccggccgcacctacccggtggagacccgctaccgcccggtg
atcgacccggaggacccggacgccgacccggaccgcgaccaggtgcaggccatcgccgac
gcggtggacgagctgtgcgccgagggccccggtgacatcctggtgttcctgtccggcgag
cgggagatccgcgacaccgccgacgcgctgtccaaacaggatcgtcgcaacaccgagatc
ctgccgctctacgcccgactgtcgttcggcgagcagcaccgggtgttccagcgccacacc
ggccggcggatcgtgttgtccaccaacgtcgccgagacctcgctcacggtccccggcatc
aagtacgtgatcgacccgggcaacgcccgcatctcccgctacagccaccggctcaaggtg
cagcggctgcccatcgagccgatctcccaggcctcggccaaccagcgcaagggccgctgc
ggccgcgtctccgagggcatctgcatccggctgtactccgaggaggacttcgagagccgg
ccggagttcaccgacgcggagatcctgcgcaccaacctggcctcggtcatcctccagatg
atcgccgccggcctcggcgacatcgcggcgttcccgttcatcgacccgccggaccggcgc
aacatcaacgacggcatcggcctgttgcaggagctgggcgcgctcgacaaggacaagctg
acgccgatcggccgccggctctcgcagctgccggtcgacccgcggctggcccggatggtc
gtggccgccgaggagaacggctgcgtgcgcgaggtcatggtgatcgccgccgcactgtcc
attcaggaccctcgcgagcggccgaccgagcagcaggaacaggcccagcagcagcacgcc
cggttccgggatcccgacagcgacttcatcagcttcctcaacctctggaactacctgcgg
gagcagcagaaggagctgtcctccaaccagttccgcaagatgtgccgggccgagttcctg
aactacctgcgggtccgcgagtggcaggacatctattcccagctgcgccaggtggtcaag
gggcagggcgtctcggtcaacggcggtgagctcgacaccaagggcatccacctgtcgctg
ctggccggcctgctgtcccacctgggcatgaaggacgtcgtcacgaagggtgtcgtgaca
acgggatctgggcgaaggggccccaccgagtatctcggcgcccgcggcgcgaagttcgcc
atcttcccgggatcgacgctgtcccggcagcagccgcagtgggtgatggcggccgaactg
gtggagacctcccggctctgggcccggaccgtggccaagatcgagccggagtgggccgag
aagctgggcgcgcacctggtcaagcgcaactacagcgagccgcactgggaagccaaacag
ggcgcggtgatcgccaccgagaaggtcaccctgtacggcctgccgatcgtggccgcgcgc
cggatcaactacggccgcatcgaccccgaggtgagccgcgagctgttcatccggcacgcc
ctcgtcgacggcgagtggcgcaccaaccaccagttcttccaccacaaccgcaagctgctc
gacgacgtggacaaactcgaggaccgggtccgccggcgcaacatcaaggtcgacgacgag
accctgttcgacttctacgacaagcgggtcggcgccgaagtggtgtccgtgcgccacttc
gacacgtggtggaagaagacccgccgtgagcagcccgacctgctcacgttcgacccggag
atgctggtcaacgagagcgccggcggcatcaccgaggccgactacccggaccactggacg
cagggcggcgtgcagctgccgctgacctaccggttcgagccgggccgccgcgacgacggc
gtcaccgtgcgggtgccgctgccggtgctcgggcaggtcgacggggacggcctggcctgg
cagatcccgggcctgcggctggagctggtgacctcgctgatcaagtcgctgcccaagcag
atccgccgcaacttcgtgccggccccgaccttcgcccaggccgtggtcgaccggatcggc
gccgacgaccagcacgtgctggaggcggtggaacgggagctgcgcaccctgtccggggtg
gacatcccgcgcgaggcctggcagctggaccaggtgcccgagcacctgaagaccaccttc
cacgtggtcgacgaacgggaccgcaccctggccgagggcaagaacctggcggcgatcaag
gaggacctgcgggccaccatgcgggccgcgctgtccgccgcccccaacgacatcgagcgc
accggcgtcacgacctgggacttcggcacgctgccgcgctcgcaccggcaggccgtcacc
ggctacgaggtgaccacctatccgtcgctggtcgaccgcggcgatcacgtggacatcaag
ctgctggacagtgccgcccagcagcgggcggccatggtcctgggcacccggcggctgctg
ctgctccagctgccgtccccggtgaagctgatcgtccgcagcctgagcaacgacgcgaag
ctgacgctgagccgcaacccgcacggcggcgtgccggcgctgctggccgactgcgtcgcc
acggccgtggacaagctggtcgccgacggcggcggcccggcgttcgaccaggccggcttc
gagaagctgctggtccgggcccgccagggcctgaacgagacggcgctggacgtggtcaac
caggtccgccgggtgctcaacgaggcccaggccgccgaacggcagctggcggcggccaag
ttcgccccggacgcctccgtcgccgacatccgggcccagatcaggggcctggtgcacgcc
gacttcgccgccgagttcggctaccagcggctgtcggacgtggagcgctacctcaaggcg
atccagcggcggctggacaagctgcccgagaacccgcagcgggacgtgcagcgcaccgag
gagatcgccgagatcaccgccgagtaccgggcgctgctggccgcggtgccgccgggcgag
ccggtggagaagccgctgcgcaccatcggctggatgatccaggagctgcgggtcagctac
ttcgcgcagaccctgggcaccgcctacccggtctccgagaagcggatctacaaggcgatg
gacgagctgtga
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