Kushneria phosphatilytica: FY550_05015
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Entry
FY550_05015 CDS
T06200
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kuy
Kushneria phosphatilytica
Pathway
kuy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kuy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FY550_05015 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kuy03019
]
FY550_05015 (rnr)
03016 Transfer RNA biogenesis [BR:
kuy03016
]
FY550_05015 (rnr)
Enzymes [BR:
kuy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FY550_05015 (rnr)
Messenger RNA biogenesis [BR:
kuy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FY550_05015 (rnr)
Transfer RNA biogenesis [BR:
kuy03016
]
Prokaryotic type
tRNA degradation factors
FY550_05015 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
WHD_RNase_R
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QEL10553
UniProt:
A0A5C0ZYU1
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All DBs
Position
1135611..1138166
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AA seq
851 aa
AA seq
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MSQWNTGDDPQAAREASRYENPVPSREYLLEQLVDYGKPISAENMCRRLGIEDEEQQEAV
RRRLNAMARDGQAIGTRDGSFEAIDPSSLIDGRVVGHRDGIGFMVRDDKVKPDLVIPPRQ
MRRLFDGDRIRARISGRDRRGRDEISINEILERRTQQLVGLYRERGPDIGVLVPENNRIA
HEVMIPAGSEAGAKDGQVVMVRITEQPELRQQPMGEVIEVLGERMDPGMEIDIAIRQHDL
PEAFPEEVLDQIRHMSEEVREEDKGARVDLRDWPLVTIDGEDARDFDDAVYAWKTKSGGW
KLVVAIADVSHYVPAGSALDEEAYSRGNSVYFPGQVVPMLPELLSNGLCSLNPDVDRLCM
VCEMNISQQGAISRYKFYEGIMRSKARLTYTKVGTMLEDADSEAGQALRREHASLVKPLE
ALHGLYQTLRQARSVRGAIDFETTETQIVFNDQRKIERIVPRVRNDAHKLIEECMLAANV
ATARFLDKHKLPALYRVHARPAEERLDNLRVFLGELGLTLDGSGENGEPTPSDFQRLREA
ISDRPDADIIQMVMLRTMTQAIYTPYNEGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSV
IRSNRNSGHVERLADTPIDKPQRWCPYTFEQMIELGEHCSMTERRADDATRDVEDWLKCE
FMSDKVGDIFEGSIASVTQFGLFVRLDEHFVEGLVHISSLPSDYYQYEAERHQLKGDRGG
LTYRLGDGVTVQVARVDLDQRRIDFELTEAQPRSRRRVRKKPGASPEGVSESTDKPEEKK
KPRKRKSRPGKRERERNRRSGHEAAQHEGSSAKGEKTAKSRDGKKPAASAKSKRKGETSG
SGNKRSDGKRS
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaatggaataccggcgacgacccgcaggcggcgcgcgaagccagtcgctatgaa
aaccccgttcccagccgtgaatacctgctggagcagttggtcgactacggcaagccgatt
tctgccgaaaacatgtgtcgtcgcctcggtatcgaggatgaagagcagcaggaggccgta
cgtcgtcgtcttaatgccatggcccgtgatgggcaggccatcggtacccgtgatggcagt
ttcgaggcgatcgaccccagctcgctgatcgatggtcgggtagtcggtcatcgcgatggc
atcggtttcatggtgcgtgatgacaaggtcaagcctgatctggtcattccgccgcgtcag
atgcggcgtctgttcgatggcgaccgtatccgtgcccgcatcagcggtcgggatcggcgg
ggacgtgatgaaatcagtatcaacgagattctcgagcgacgtacccagcagctggtaggg
ctctatcgcgagcgcggccccgatatcggcgtgctggtgcccgagaacaatcgtattgca
cacgaagtgatgatccctgcgggcagcgaggccggcgcaaaggatggccaggtggtcatg
gtgcgcatcaccgagcagcctgagctgcgtcagcagcccatgggcgaggtgatcgaggtg
ctgggagagcgcatggatcccggcatggaaatcgatattgccattcgccagcatgatttg
cccgaggcgttccccgaggaagtgctggaccagattcgccacatgagtgaagaggttcgg
gaagaggacaagggggcgcgtgtcgatctgcgtgattggccactggtcactatcgatggc
gaagatgcccgggatttcgacgatgccgtctatgcctggaagacgaaatccgggggctgg
aagcttgtcgtggcgattgcggatgtgtcgcattatgtaccggccggttcagcgctggat
gaagaggcctattcgcgcggcaattcggtctactttccagggcaggttgtgccgatgctg
ccggagctgctctccaacggtctgtgctcgctcaatccggatgtcgatcggctctgcatg
gtctgtgagatgaatatctcccagcagggtgcgatcagccgctacaagttctatgaaggc
atcatgcgctcgaaggcgcggctgacctacaccaaggtcgggaccatgcttgaggatgcc
gacagcgaggccgggcaggccctgcgtcgtgagcatgcctcgctggtgaagccgttggag
gcgcttcatggtctctaccagaccctgagacaggcacgcagtgtgcgtggtgcgatcgat
tttgaaaccaccgagacgcagatcgttttcaatgatcagcgcaagatagagcgtatcgta
ccgcgggttcgcaacgatgcgcacaagctgatcgaggagtgcatgctggcggccaatgtg
gcgaccgcccgttttctcgacaagcacaagctgccggcgctctatcgggtgcatgcgcgt
cccgccgaagagcgtctggataacctgcgtgtctttcttggtgagctgggtctgacgctg
gatggcagtggcgaaaacggtgagcccacgcccagtgactttcagcgtctgcgtgaagcg
atcagtgatcgtccggatgccgatatcattcagatggtcatgctgcgcaccatgactcag
gcgatctatacgccttacaacgaaggtcacttcggactggcttatccggcctatgcacac
tttacatcaccgatccggcgctaccccgatctgctggtgcatcgcgccatccgttcggtg
attcgcagcaaccgcaacagcggtcatgttgaacgacttgccgataccccgatcgacaag
ccgcaacgatggtgcccctacacattcgagcagatgatcgagctgggcgagcactgctcg
atgaccgagcggcgcgctgatgatgccacccgggatgtcgaggactggctgaaatgcgag
ttcatgtcggacaaggtgggagatatcttcgaaggcagtattgcgtcggttacccagttc
ggcctgtttgtgcgccttgatgagcactttgtcgaagggttggtacatatctcttccctg
ccttcggactattatcaatacgaagccgagcgtcatcagctcaagggtgatcggggtggt
ctcacctatcgtcttggtgatggtgtgacagtccaggtggcccgggttgatcttgaccag
cgacgcatcgatttcgagctgaccgaggcgcagcctcgttccagacgtcgggtgcgcaag
aagccgggtgcatcccccgagggcgttagcgaatcgaccgataagcctgaagagaagaaa
aagccgcgcaagcgcaaatcacggccgggtaagcgtgaacgcgagcgcaatcgccgctcc
ggacacgaggctgcgcagcacgaagggagttcggcaaagggtgaaaaaaccgctaaatcc
cgtgatggaaaaaaaccggctgccagtgcgaagtcaaaacgcaagggagaaacttccggc
agcggaaacaagcgatccgacggtaagcgctcatga
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