Kushneria phosphatilytica: FY550_07225
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Entry
FY550_07225 CDS
T06200
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kuy
Kushneria phosphatilytica
Pathway
kuy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kuy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FY550_07225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kuy03400
]
FY550_07225
Enzymes [BR:
kuy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FY550_07225
DNA repair and recombination proteins [BR:
kuy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FY550_07225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
AAA_22
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QEL10940
UniProt:
A0A1S1P0W1
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All DBs
Position
complement(1582118..1585588)
Genome browser
AA seq
1156 aa
AA seq
DB search
MPVSSSVLNPLAPQAPTSNQELRYWQAPHGSAEALALARLADESAVPLLVMTPDTASAQR
MEGALRFYSSAPDDILVFPDWETLPYDSFSPHQDIVSSRLRTLRQLQHGSARIVLVPVNT
LMQRLPPSDFVAIQALRLEVGMRIDREHFRHQLHRSGYRAVETVQEPGEYAFRGALIDLY
PVGSEAPLRIDLFDDELDTLRTFDPDTQRSRDRIEHIELLPAHEYPLTPEAIARFREGFE
TLFDVDPRHCPLYLDALQGIPAPGLEQYLPLFFEETATLFDHIGDRLQIAMLPGTYEAAE
THWDSIQTRFENLGVDPTRPLLAPHRLFTPVSELFERIKRYPRLQITREAHRHAVALATE
ALPEVAVDGRSTTPLKTLEQFLTTYSDQRVLFVAESRGRREALEETLAPLHLTLASMGSW
SAFMTDRCQYALTEGELDEGLWLHDEKVVVLTETELFGEVVRQSRRQQKATDDSELAVRH
LSELRQGAPVVHQHHGVGRYLGLETIEAGGTPAEFLSLEYAEGARLYVPVDSLHLISRYN
GASDESAPLHRLGSDQWDKARRKAAERVRDTAAELLDVYARREAREGFACDPPDDAYARF
AASFPFEETPDQRIAIDAVIHDMTSTQPMDRVICGDVGFGKTEVAMRAAFLAVQSGRQVA
VLVPTTLLAQQHYDNFRDRFADTAVNIEILSRFQGGKLQSRAFERISDGRADIVIGTHKL
LGRELDFANLGLIIVDEEHRFGVSQKERLKQLRAEVDILTLTATPIPRTLSMAMSGMRDL
SIIATPPARRLSVKTFVQQRNEATLKEAILRELLRGGQVYYLHNEVRTIESTAEKVRELV
PDARVGIAHGQMAERALERAMSDFYHKRFNVLVCSTIIETGIDVPSANTIIIERADKFGL
AQLHQLRGRVGRSHHQAYAYLLTPPPKQMTADAGKRLEAISQAEDLGAGFTLASHDLEIR
GAGELLGQEQSGQIETIGYTLYMEMLDRAVKAIRNGQTPNIEAPLDAGIEISLNMAALIP
EEYLRDVQQRLIMYKRISNANSEEELRELQVEMVDRFGLLPDAVRNLFRQTRLRLQAARL
GVTRLEAGEQKGRIQFTEKPAIDPMTLIELIQKEPKRYRLDGSDTLRFEAEMAEPEKRFE
AVEALLDRLEQQAQAA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgtccagttccgtactcaatccgctggcgcctcaggcgccgacctcgaatcaa
gaactccgctattggcaggcgccacatggtagcgccgaagccctggcacttgcccggctg
gccgatgagagcgctgttcccctgctggtaatgacgccggataccgccagtgctcagcgc
atggagggcgcactgcgcttctacagcagtgcaccggatgacatcctggttttccccgat
tgggaaacgctgccatacgacagtttctctccccatcaggatatcgtgtcatcacggcta
cgcactttgcgtcagcttcagcatggcagcgcccgcattgtgcttgtgccggtcaatacc
ctgatgcagaggctgcccccgagtgactttgtggccatccaggcgcttcgccttgaagtg
ggcatgcgcatcgatcgagagcacttccgtcatcaattgcatcgcagcggctatcgcgct
gtcgagacggtacaggaacccggcgagtatgcctttcgaggcgctctgatcgatctgtat
ccggttggcagcgaagcacctctgcgcattgacctgttcgatgatgagcttgacactctg
cggaccttcgatcccgatactcaacgctcacgtgatcgcattgagcacatcgagctgtta
ccggcacacgagtacccgctgacccccgaagcgatagcgcgctttcgcgagggcttcgaa
accctgttcgatgtcgacccacgccactgccccctgtatctcgacgccctccagggtatc
cctgcccccgggctggaacagtacctgccactgttctttgaagagacggccacactgttc
gaccatatcggtgaccgactgcaaatcgccatgctaccgggcacttacgaggcagcggaa
acacactgggactcgatccagacccgcttcgagaatctcggtgttgatccgactcgcccc
ctgctggcaccgcatcgcctttttacacctgtcagtgagctgttcgaacgcatcaagcgt
tatccgcgtctacagattacccgtgaagcacatcggcatgctgtggcactcgccaccgaa
gcactccccgaagttgccgtcgatggtcgttccacgaccccgctgaaaacactcgagcag
ttcctgaccacctatagtgatcagcgcgtgctctttgttgccgaatctcgtggtcgccgc
gaagcgcttgaagaaaccctcgcaccactgcacctgacccttgccagtatgggcagttgg
tcggcgttcatgactgacaggtgccaatatgcactgaccgaaggagaactcgacgaaggc
ctttggctgcacgatgaaaaagtagtggtcctgaccgagaccgaattgttcggggaggtc
gtgcggcagagtcgccgtcagcagaaggcgaccgatgacagcgaactggctgttcgtcat
ctgtccgagctgcgccagggagcgccagtggtgcaccagcatcatggtgtcggtcgctat
ctcggcctggagaccatagaggccggtggtacaccggcagaatttctgtcactggaatat
gccgaaggcgctcgcctctatgtgcccgtcgacagcctgcacctgatctcgcgttataac
ggcgccagcgatgagtccgcgccactccatcgcctgggcagcgatcagtgggacaaggcg
cgacgcaaggcggctgaacgggtgcgcgataccgccgccgaactactggacgtctatgca
cgccgcgaagcccgggagggttttgcctgcgatccacctgatgatgcctatgctcgtttt
gcggcctccttccccttcgaggagacgcccgatcagcggatcgccattgatgccgtcatc
catgacatgacttccactcagccgatggatcgggtgatctgtggcgatgtcggcttcggc
aagaccgaggttgccatgcgagccgcctttctcgcagttcaatcgggtcgtcaggtcgcc
gtgctggtacccactaccctgctggcccagcaacactatgacaacttccgtgatcgcttt
gccgataccgcagtcaatatcgagattctttcccgattccagggaggcaagctgcagtcc
cgcgccttcgaacggatcagtgatggccgtgccgatatcgtgatcggcacccacaagttg
ctgggccgcgagcttgatttcgccaatctcggactgatcatcgttgatgaggaacaccgc
tttggcgtttcgcagaaggagcgactcaagcaactgcgtgccgaggtcgacattctcacc
ctgaccgccacgcctatccccagaaccctgtcgatggcaatgagcggcatgcgggatctg
tcgatcattgccacgccaccggcgcgccgattgtcggtaaaaaccttcgtccagcaacgc
aacgaggcgacgctcaaggaagccattctgcgcgaactgttgcgtggcggtcaggtctac
tatcttcataatgaagtccgcaccatcgagagcactgccgaaaaggtaagagagctggtg
ccggatgcacgggttggtattgcgcatggacaaatggccgaacgggcactggagcgtgcc
atgtccgacttctaccacaagcgcttcaatgtcctggtctgctcaaccatcatcgaaacc
ggtatcgatgtgcccagcgccaataccatcatcatcgaacgcgctgacaagttcgggctg
gcccagttacatcagctgcgcggccgggtgggacgatcacaccatcaggcctatgcctac
ctgctgactccgccgcccaaacagatgaccgctgacgccggcaagcgcctggaagccatc
tcacaggctgaagatctgggtgccggctttacactggccagtcatgatctcgagatccgt
ggcgctggcgagttgctgggccaggagcagagcggtcagatcgaaaccatcgggtatacg
ctctacatggaaatgctcgatcgggccgtcaaggcgatccgcaatggtcagacccccaat
atcgaggcaccactcgatgccggcatcgaaatcagcctcaatatggcagcactgatcccc
gaagaatacctgcgcgacgtacagcagcgtctgatcatgtacaagcgcatcagcaatgcg
aacagcgaagaagagctgcgtgaattgcaggttgaaatggtggatcggtttggtctgtta
cccgatgctgtacgcaatctgttccgtcagacccgactgcgactccaggctgctcggcta
ggcgtcacgaggctggaagcgggcgagcagaaaggccgtattcagtttaccgaaaagcca
gccatcgaccccatgacgctgattgaactgattcagaaggaaccgaagcgttatcgcctc
gatggcagtgacaccctgcgcttcgaggccgaaatggctgagccggaaaagcgcttcgag
gccgtggaggcgctgctggatcggctggaacagcaggctcaggcagcctga
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