Kushneria phosphatilytica: FY550_10685
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Entry
FY550_10685 CDS
T06200
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kuy
Kushneria phosphatilytica
Brite
KEGG Orthology (KO) [BR:
kuy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kuy03019
]
FY550_10685 (hrpA)
Enzymes [BR:
kuy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FY550_10685 (hrpA)
Messenger RNA biogenesis [BR:
kuy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FY550_10685 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
nSTAND3
nSTAND_NTPase5
T2SSE
AAA_25
ABC_tran
SLFN-g3_helicase
NACHT
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QEL11549
UniProt:
A0A1S1NV52
LinkDB
All DBs
Position
complement(2313764..2317711)
Genome browser
AA seq
1315 aa
AA seq
DB search
MSDTATDARQQLQTLRERLSRTTLSVAHDQGSRLERLEARARRGQPIDRAISDVQTRLDR
SIAQVETRLAQPLGYHYPAELPVVEKREDISRAIAEHQVVVVAGETGSGKTTQLPKLCLE
LGLGARGLIGHTQPRRLAARSVASRLAEEMETPLGGAIGYQVRFTDQTAEQTRVKLMTDG
ILLAETRHDPDLRQYEAIIIDEAHERSLNIDFLLGYLRRLLDRRPDLKVIITSATIDVDR
FAQHFGSQSQPAPVIEVSGRAYPVETRYRPLVRQESDEEDLTLQEGILQAVEEVTAIERE
HRWFTGPRDILIFLPGEREIRETADTLRRAQLRDTEVLPLYARLSNAEQNRVFSSHTGRR
IVLSTNVAETSLTVPGIRYVIDPGLVRISRYSYRAKVQRLPIEPISQASADQRRGRCGRV
AEGVCLRLYSEEDYLSRPTYTEPEIQRTNLASVILAMLSLKLGDISNFPFIDPPDGRFVK
DGFRLLFELGAVDERNRLTRSGQRLSRLPIDPRLGRMVLAGAEYGSLTETLIVVSALSIQ
DPRERPADKREAADQAHRQWQDKDSDFAAWINLWRGFEAKREELTGSRLRRWCRDQFLSY
LRLREWHDTYRQLRQLARELELGFNSEPADVARLHQALLSGLLSNLGLLNEQREYLGARN
RKFLIHPASGLAKRSPKWVMAGELVETSRLFAREVAAIKPEWIEPLAGHLVKRSVSEPHW
EMKRGQVVAFEQVTLFGLPIVARRKVHYGPIAPQEARDIFIRSALVEGQFSTKGEFFEHN
RALIDEVEDLEDRARKRDILVDEETLVDFYDQRLPEDIYTVKGFERWRSQAEAQEPRLLF
LDRETLLAREASEVTVEQYPDELELGTPGTGSRRYPLSYHFAPGAEDDGVTLTVPAAMLS
TLPRERLEWLVPGLRRDKAIALMKSLPKQYRRQVVPIPDWVDAALETVTPDNTPLHVALG
EFMRRRTGIRLPADAWQPEQLPEHLHMNIRVVDHEGHTLGQGRDLDALIERFEADAREGA
RAMAGDELSRSGLTGFPGGELPESHVRDQAGIRVEAWPALVDEGDTLGVALFDHPARAHY
QHRHGIKRLAMRRLPDQVRWLSRDIPGLERSVLLFANVGSRRDLIDDFVAAVFLQVFAFD
PLPRDAEAFEARLNAERGRIGEVGETLLARVEAALEGHLKVSKMLKGRVSFNLARSWSDV
KGQMQRLVHPGFISLAEEWLRHYPRYMEAAGIRLEKAPREPRRDQLSMDEVNALQTRLDE
RRARQENGGIRDPELETFGWWLEELRVSLFAQQLGTLAPVSVQRLERRWQELVAV
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgataccgcaaccgatgcccggcaacagttgcagacgctgcgtgagcggctctcc
cggaccaccctgagtgttgcccatgatcagggcagtcgccttgaacggctggaagcgcgt
gcgcgtcgcggtcagccgattgatcgcgccatcagtgatgtgcaaacgcgtctcgatcgt
tccattgcccaggtcgaaacccgcctggcccagccgctggggtatcactatccggccgag
ctcccggtcgtcgagaagcgggaagacatcagccgcgccattgccgagcaccaggtggtt
gtcgtggctggcgagaccggatccggcaagaccacccagttacccaagctctgcctggag
cttggtctgggggcgcgaggactgattggtcatacccagccgcgtcgtctggcggctcgc
tcggtggcttcacgattggccgaggagatggaaacccctctgggtggcgccatcggctat
caggtacgttttaccgatcagacggcagagcagacccgggtcaagctgatgaccgacggg
attctgctcgcggaaacccgtcatgatcctgacctgcggcagtatgaagccatcattatc
gatgaggcgcatgaacgcagtctcaatatcgatttcctgctcggctatctgcgccggctg
ctcgatcgtcgacccgatctcaaggtgattatcacctcggcgaccatcgatgttgatcgt
tttgcgcaacacttcggtagtcaatcgcagcctgccccggtgatcgaggtctcgggccgg
gcctatccggttgagacccgttatcggccactggtgcgccaggagagcgatgaggaagat
ctgacgctgcaggaaggcattttgcaggccgtcgaagaagtaactgccattgagcgagag
catcgctggtttaccggcccgcgggatatcctgatctttctcccgggggagcgcgaaatt
cgcgaaactgccgataccctgcgacgtgcccagttgcgtgataccgaagtgctcccgttg
tatgcccgactgtccaatgctgaacagaaccgggtcttctcgtcacataccggccggcgc
atcgtgctgtcgaccaatgtcgccgagacttcactgacagtgcccggcatccgttatgtc
atcgatcccgggctggtacgtatcagccgctacagctaccgtgccaaggtgcagcgactg
ccgatcgagccgatcagtcaggccagcgccgatcagcggcgcgggcgctgtggtcgtgtg
gcggaaggcgtctgtcttcgtctttacagcgaagaggattatctgtcgcggccgacctat
accgagccggagattcagcgtaccaatcttgcttcggtgattcttgcaatgctgtcgctg
aagctgggtgatatcagcaactttccgttcattgatccgccggatgggcgtttcgtcaag
gatggctttcggctgctgtttgagctgggggcagtggacgagcgtaatcgcctcacacgc
agtggccagcgtctctctcggctaccgatcgacccccggctggggcgcatggtgctggcc
ggagcggaatatggcagcctcacagagaccctgatcgtggtcagtgcactgtcgattcag
gacccgcgtgagcggccagcggacaagcgtgaggctgccgatcaggcgcatcgccaatgg
caggacaaggattccgatttcgccgcatggatcaatctgtggcgagggtttgaagctaaa
cgcgaagagctgaccggtagccggttgcgtcgctggtgtcgtgatcagttcctgagctat
ctgcgtctgcgtgaatggcatgatacctatcgccagctgcgtcagctggcacgcgagctg
gagctcggcttcaatagcgagcctgcagatgtggcgcgtctgcatcaggcgttgttgagc
ggtctgctctccaatctcggtctgctcaatgagcagcgtgaatatctgggtgcccgcaac
cgcaagttcctgattcatccggcttcgggactggcaaaacgttcgccgaaatgggtgatg
gcgggtgaactggtggaaaccagccgattgtttgcccgtgaagtagcggccatcaagccg
gaatggatcgagccgctggccggtcatctggtcaagcgcagtgtcagtgagccgcactgg
gagatgaaacgggggcaggtcgtcgcattcgagcaggtcaccctgttcggtctgcctatc
gtggcacggcgcaaggtgcattatgggccgatcgcaccacaggaggcgcgcgatatcttc
attcgcagcgcgctggtggaagggcagttttccacaaaaggtgagtttttcgagcataac
cgggcgctgatcgacgaggtcgaggatctcgaggatcgggcacgcaagcgcgacattctg
gtagacgaggagactctggtcgatttttacgatcagcgtctgccggaagacatctatacg
gtgaaggggttcgagcgctggcgttcacaggccgaagcccaggaaccgcggctgctgttc
cttgatcgggagacgctactggctcgcgaggccagtgaagtgaccgttgaacaatacccg
gatgaactggaactgggcacgcccggtaccggcagtcgccgctacccgctctcctatcac
tttgcaccgggggccgaggatgatggcgtgaccttgacggtgccggcggcgatgctatcg
accctgccacgcgagcgcctggaatggctggtgccggggttacggcgcgacaaggccatt
gcgctgatgaaatcgctgcccaagcagtatcgtcgtcaggtggttccgatccccgactgg
gtcgatgcggcactggaaacggtgacaccggacaatacgccgctgcatgtggcactgggc
gagttcatgcgacgtcgtaccggtattcgattgccggccgacgcctggcagccggaacag
ttgcccgagcacctgcacatgaacattcgagtggtcgaccatgaggggcacactctcggg
caggggcgcgatctcgatgcattgatcgagcgcttcgaggccgatgcgcgtgaaggcgcc
cgagcgatggctggtgatgagctctctcgtagtggcctgaccgggttccccggaggagag
ctgccagagtcgcatgttcgcgatcaggccggtattcgcgttgaagcatggccggcactg
gtggatgaaggggatacactgggtgtcgcgttgttcgatcatcctgccagggcgcactat
cagcatcgtcacggcatcaaacgactggccatgcggcgattgccggatcaggtgcgctgg
ctgtcgcgagatattccaggtcttgagcgcagcgtcctgctgtttgccaatgtcggttcc
cgtcgcgatctgatcgatgactttgttgctgccgtttttttacaggtatttgcctttgat
cccttgccccgtgatgccgaggctttcgaagcccgactcaatgccgagcgaggaagaatt
ggcgaggtgggcgaaactctgctggccagggttgaagcggctctggaggggcatctgaag
gtttcgaaaatgctcaaggggcgtgtgagtttcaacctggcgcgtagctggtcggacgta
aaaggccagatgcaacgcctggtacacccggggttcatcagtctggcggaagagtggctc
aggcactatcccaggtacatggaggcggccgggattcggcttgagaaggcgccgcgtgag
ccccgacgcgatcagctgtcgatggatgaggtcaatgctctccagacccggctggatgag
cgccgggcgcggcaggaaaacggtgggatacgcgatcctgaactggaaaccttcggctgg
tggctggaggagctgcgcgtctcgctgtttgcccagcaactgggcacgctggcgccggtg
tcggttcaaaggcttgagcgacgctggcaggagcttgtggcggtctga
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