Klebsiella variicola At-22: Kvar_2882
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Entry
Kvar_2882 CDS
T01170
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kva
Klebsiella variicola At-22
Brite
KEGG Orthology (KO) [BR:
kva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kva03019
]
Kvar_2882
Enzymes [BR:
kva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Kvar_2882
Messenger RNA biogenesis [BR:
kva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Kvar_2882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
SLFN-g3_helicase
AAA_23
TsaE
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ADC58768
LinkDB
All DBs
Position
complement(2998916..3002818)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKITFPQLYQQLDGLMLRDKTRFARRLHGVKKVKNPESQQAILQEMAQEISQAAGK
VLLREAARPAITYPENLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
LKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNHAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGE
REIRDTADALNKLDLRHTEVLPLYARLSNSEQNRVFQPHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNYLRVREWQDIYTQ
LRQVVKELGLPINSEPAEYREIHTALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVGARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEIEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDAWWKQASRETPDLLNFEKSMLIKEGA
EQVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEEAGFEWQIPGLRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRATPLELPLLDSLERELRKMTGVTIDREAW
QWDQVPDHLKITFRVVDDKNKKLQEGRSLQALKDALKGKVQETLSAVADDGIEQSGLHIW
SFGTLAESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQAMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGGPVWTEEGFSQLHDK
VRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMAGLVYRGFVTG
NGFRRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKIESVQQAWQQWLNKLPPNRREDDD
VREIRWMIEELRVSFFAQQLGTPYPISDKRVLQAMEQITP
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaaatcaccttcccccagctttatcaacagctcgacggcctgatg
ctgcgcgataaaacgcgcttcgcccgccgtctgcacggtgtgaagaaggttaaaaatcct
gaatcgcaacaggccatcctccaggagatggcgcaggagataagccaggcagccggtaaa
gtcctgctgcgcgaagcggcgcgtccggccatcacctatcctgaaaacctgccggttagc
cagaaaaaacaagagattctcgaggcggtgcgcgaccaccaggtggtgatcgtcgccggg
gagaccggttcgggtaaaaccacccagctgccaaaaatctgcatggagctgggccgcggg
ctgaaagggctgatcggccatacccagccgcgtcgtctggccgcgcgaaccgtcgccaac
cgtatcgccgaggagctgcaaacggagccgggcggttgcatcggctataaagtccgcttt
agcgatcacgtcagcgacaacaccatggtcaagctgatgaccgacggtattctgctggcg
gagatccagcaggatcgcctgctgatgcagtacgacaccatcattatcgatgaagcgcac
gagcgcagtctgaacattgattttctgctcggctatctgaaagagctcctgccgcgccgc
ccggacctgaaaatcatcattacctcggcgaccatcgacccggaacgtttctcaaagcat
ttcaatcatgcgcccattatcgaagtctccgggcggacttacccggtggaagtccgctac
cggccgatagtggaagaggcggacgacaccgagcgcgatcaattacaggcgatttttgat
gcggttgacgaactggggcgcgaaggacccggcgatattctgatctttatgagcggtgag
cgggaaattcgcgataccgctgatgcgctgaataagctggatctgcgccatactgaagtg
ctgccgctgtatgcccgcctgtccaacagcgagcagaaccgcgtcttccagccgcacagc
ggacgacgcatcgtgctggcgaccaacgtggcggaaacttcgctgaccgtgccgggcatt
aaatacgttatcgatcccggtactgcgcgtatcagccgttacagctaccgcaccaaggtg
cagcgcctgccgatcgagccggtttcccaggcgtccgccaaccagcgtaagggccgctgc
ggccgcgtttcggaagggatctgtattcgtctttattcggaagacgatttcctgtcgcgc
ccggagtttactgacccggaaattctgcgtaccaacctggcgtcggtcatcctgcagatg
accgccctgggcttaggcgatatcgccgccttcccgtttgtcgaagcgccggataagcgc
aatatccaggacggcgtgcgcctgctggaagagctgggcgccatcaccaccgatgagcag
gccaccgcctataagctgacgccgatgggccgccagctcagccaactgccggtggatccc
cgtctggcgcgcatggtgctggaggcgcagaagcacggctgcgtgcgggaagcgatgatc
atcacctccgcgctgtcgattcaggacccgcgcgagcggccgatggacaaacagcaggcc
tccgatgagaagcaccgccgcttccacgataaagagtccgatttcctcgccttcgtcaat
ctgtggaactaccttggcgagcagcagaaggcgctgtcgtcgaatcagttccgccgccag
tgccgggtcgattttcttaactatctgcgcgtgcgcgagtggcaggacatctacacccag
ttgcgccaggtggtgaaagagctcggcctgccgatcaacagcgagccggcggaatatcgc
gagatccataccgcgttgctgaccggtttgctgtcgcacatcggcatgaaggatgccgat
aagcaggagtttaccggcgcgcgcaacgcccgcttctccatcttcccgggttccggtttg
tttaaaaagccgccaaaatggacgatggtggcggaactggtggaaaccagccggctgtgg
gggcgcatcgccgcccgcattgagccggagtgggttgagccggtcgcgcagcacctgatc
aagcgctcatacagcgaaccgcactgggagcgggcgcagggcgcggtgatggcgacggag
aaggtcaccgtctacggcctgccgatcgttggcgcacgcaaggtcaactacagccagatc
gacccggcgctgtgccgcgaactgtttatccgccacgcgctggtggagggcgactggcag
acgcggcatgccttcttccgggaaaacctgaagctgcgggcggaaatcgaagagctggag
cataaatcgcgccgccgcgacatcctggtggatgacgaaaccctgttcgagttctacgac
cagcgcattagccacgacgtcatctccgcccgtcattttgatgcctggtggaagcaggcc
agccgcgaaacgccagacttgctcaattttgaaaagagcatgctgattaaagaaggggcg
gagcaggtcagcaagctggactacccgaacttctggcatcagggcaacctcaagctgcgg
cttagctaccagtttgaaccgggcgccgatgccgatggcgtgacggtgcatattccgctg
cctctgctgaaccaggtggaggaggccggatttgagtggcagatcccaggcctgcgtcgc
gagctgattatcgcgctgataaaatcgctgccgaagccggtgcggcgcaatttcgtcccg
gcccctaactatgcggaagcgtttctcggcagggcgacgccgcttgagctgccgctgctt
gattcgctggagcgtgagctgcgtaagatgaccggcgtgaccatcgaccgcgaggcctgg
cagtgggatcaggtgcccgatcacctcaaaatcaccttccgggtggtggatgacaaaaac
aagaagctgcaggaagggcgctcgctgcaggcgttgaaagacgcgctgaagggcaaagtt
caggagacgctgtcggcggtggccgatgacggcatcgagcagagcgggctgcatatctgg
agctttggtacgctggcggaaagttacgaacagaaacgcggcaactataaggtgaaagcc
tggccggcgctggtggacgagcgcgacagcgtggctatcaagctgtttgataatccacag
gaacagcagcaggccatgtggcgtggtctgcgccgcctgctgctgctcaacatcccgtcg
ccaattaagtatctgcacgaaaaactgccgaacaaagccaagcttgggctctattttaac
ccgtacggtaaagtgctggatctgattgacgattgcatctcctgtggcgttgataagctt
atcgacgaggcgggtggtccggtgtggacggaagagggcttcagtcaattgcacgataaa
gtgcgagccgagctcaacgacacggtggtggagatcgctaaacaggtcgagcagatcctc
accgcggtgttcaatatcaacaaacggctgaaaggccgcgtggatatgaccatggcgctg
gggctgtcggatatcaaagcgcagatggcgggtctggtgtatcgcggttttgtcaccggc
aacggtttccgccgtcttggcgatacgctgcgttatctgcaggcgattgaaaagcgtctc
gagaagatggctatcgatccgcaccgcgatcgcgcgcagatgctgaaaattgagagcgtg
cagcaggcgtggcagcagtggctgaataagctgccgccgaaccgccgtgaggacgacgat
gtccgggagatccgctggatgatcgaggaattgcgggtgagcttcttcgcccagcaattg
ggcaccccgtatcccatctcggacaaacgcgtcctgcaggcgatggaacagatcacgccg
taa
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