Klebsiella variicola At-22: Kvar_3298
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Entry
Kvar_3298 CDS
T01170
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kva
Klebsiella variicola At-22
Pathway
kva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kvar_3298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kva03019
]
Kvar_3298
03009 Ribosome biogenesis [BR:
kva03009
]
Kvar_3298
Enzymes [BR:
kva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Kvar_3298
Messenger RNA biogenesis [BR:
kva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Kvar_3298
Ribosome biogenesis [BR:
kva03009
]
Prokaryotic type
rRNA processing factors
Kvar_3298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ADC59178
LinkDB
All DBs
Position
3427932..3431171
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPA
PMLEEPVAAPAVAAAPVAAAAPAQPGLLSRFFSALKNIFSGTEEAKPVEVPVEKKAEEKP
ERQQERRKPRSNNRRDRNDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRR
NRREKQPQNVEARDARQTVGDDADKAKSRDEQQPRRERSRRRNDDKRQAQQEVKVQTREE
PEVQETEQEERVQTLPRRKPRQLSQKVRIESAVAEQTAEIAPETVVAEVAAPRSEPVKAE
LPAVVENVVEHDENGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA
CASPEMASGKVWIRYPVVRPQDQQPEEVPVQDTSAIEAIEAVATPVAVVETVTAAPVTVE
PATMEPVTAEPVVVEPVVAAEPVIVDTPEIVEPAAVEPAPVEAPAVEAPQAIAPVTIDAE
PVTVEPEVVETAPVVEAPVETIVPATETVVEAPVTEAAPTAPAEPVKAETPVSKPVVVAG
DRHATAPMTRAPAPDYVPEAPRHSTWVRPPFAFEGKGAAGGHSATRKATAEPTRPQPVE
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaacctagccttgaagccgcgtttgtcgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccccgct
aactacaatgcgcacggtcgtcctaatatcaaagacgtgctgcgtgaaggtcaggaagtt
atcgtgcagattgataaagaagaacgcggcaacaaaggcgctgcgctcaccacctttatc
agcctggcaggcagctatctggtcctgatgccgaacaacccgcgcgcggggggaatttcc
cgccgtatcgagggcgacgaccgcactgaactgaaagaagcgctggcgagcctggagctt
ccggacggcatgggtcttatcgttcgcaccgctggcgtcggcaaatctgccgaagccctg
cagtgggacctgagcttccgcctgaagcactgggaagcgattcagaaagccgcggaaagc
cgtccggcgccgttcctgatccaccaggaaagcaacgtgattgtccgcgcattccgcgat
tatctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgctcgagctggcg
cgccagcatatcgccgcactgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccattatcagattgaatcgcaaattgagtccgccttccag
cgtgaagtgcgcctgccttccggcgggtctatcgttatcgacagcaccgaagcgctgacc
gcgatcgatatcaactccgcccgcgccactcgcggcggcgatatcgaagagacagccttc
aataccaaccttgaagcggctgacgagattgcccgccagctgcgtctgcgcgacctcggc
ggcttgatcgttatcgacttcatcgatatgaccccggttcgccaccagcgtgcggtggaa
aaccgtctgcgtgaagccgttcgtcaggaccgcgcgcgcattcagattagtcatatttcg
cgcttcggcctgctggagatgtctcgccagcgcctgagcccgtcgctgggcgaatccagc
catcacgtctgcccgcgctgctccggcaccggtaccgtgcgtgataacgaatcgctgtcg
ctctctattctgcgtctgattgaagaagaggcgctgaaagagaacaccaaagaagtccac
gccatcgttccggtaccgatcgcctcttatctgctgaacgaaaaacgtgccgcagtgagc
gcaatcgaatcccgtcagggcgatgtccgcgtcattatcgtgccaaacgacgagatgcag
acgccgcactactccgtcctgcgcgtgcgcaaaggtgaagagacctcaacgctgagctat
ctgctgccgaagctgcatgaagaagagatggcgctgcctggtgacgaggagccagcagaa
cgtaaacgtccggagcagcctgcgctggccgcctttgtgatgcctgacgccccaccggca
ccgatgctggaagagcctgtggctgcccctgcggtcgccgctgccccggtcgcggccgcc
gcgccggcccagccgggactgctctcacgcttcttcagcgcgctgaaaaatatcttctct
ggcactgaagaagccaagccggttgaagttccggtcgagaagaaagcggaagaaaaaccg
gagcgtcagcaggagcgccgcaaaccgcggagcaacaaccgccgcgatcgcaacgaccgc
aacgatcgccgtgataaccgcgacaatcgtgacaaccgcgataaccgtgacaatcgcgac
acccgtgcggacaatgccgagggtcgtgagccgcgcgaatcgcgtgaagaaaaccgtcgc
aatcgtcgcgaaaagcagccgcaaaacgtagaagcgcgtgacgctcgccagaccgtcggc
gatgacgcggacaaagccaaatcccgcgacgagcagcagccgcgccgcgaacgctcccgc
cgccgcaatgacgataaacgtcaggcgcagcaggaagtcaaggtgcagacgcgtgaagag
ccggaagtacaggagactgaacaggaagagcgtgtgcagaccctgccgcgtcgtaaaccg
cgtcagctctcccagaaagtacgcattgagtcagccgttgccgagcagactgccgagatc
gcgcctgagaccgttgtggctgaagtcgccgccccgcgcagcgagccggtgaaagccgaa
ctgccggcggtagtggaaaacgtagtggaacacgatgaaaacggcgaatcccgtgaagcg
aacggtatgccgcgccgctctcgtcgttccccgcgtcatctgcgcgtgagcggtcagcgc
cgtcgtcgctatcgtgacgaacgctatccgacccagtcgcctatgccgctgaccgtcgcc
tgcgcctcgccggagatggcttccggtaaagtctggatccgctacccggtcgttcgtccg
caggaccagcagccggaagaggttccggttcaggacaccagcgccattgaagccatcgag
gctgttgcgacaccggttgccgtggttgaaaccgtcactgccgcgccagttaccgtcgag
ccggcgaccatggagcccgttaccgctgagccggtggtcgtcgaacctgtcgtagccgcc
gagccggttatcgttgatactccggaaattgtcgagccagccgctgtcgagccagcgccg
gtcgaagcgccagctgtcgaagcgcctcaggctattgcgccagtgacgatcgacgccgag
ccggtcacggttgaacctgaagtggtggaaacggcgcctgtcgttgaagcgccagtggaa
accatcgttccggccacggaaaccgtggtggaagcaccggtgaccgaagccgccccaaca
gcccctgccgaaccggtcaaagctgaaacgccggtaagcaaacccgtggttgtggctggc
gatcgccatgctaccgcgccgatgacccgggcgcctgctccggactatgtcccggaagcg
ccgcgccacagcacctgggtgcgcccgccgttcgcttttgaaggtaaaggcgccgccggt
ggtcatagtgcgacgcgtaaagccaccgcagaaccgacccgcccacagcccgtcgaataa
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