Klebsiella variicola At-22: Kvar_3551
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Entry
Kvar_3551 CDS
T01170
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kva
Klebsiella variicola At-22
Pathway
kva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kvar_3551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kva03019
]
Kvar_3551
Enzymes [BR:
kva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Kvar_3551
Messenger RNA biogenesis [BR:
kva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Kvar_3551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
DUF6482
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ADC59431
LinkDB
All DBs
Position
complement(3721399..3722754)
Genome browser
AA seq
451 aa
AA seq
DB search
MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLL
QRLIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPAR
RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLI
GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKKEIPRIAIAGYEPDPSIKAEPIQNGRQQRGGGRGQGQGRGGQGQGRSGQPRSQNS
APRRQDGEAPKARTPDGKPPRRRRPRKPAGE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcccttggcctgaatcccgatatcctgcgcgctgtcgctgagcagggc
tacgttgagccgacccctatccaacagcaggcgatcccggcagtaatgcaggggcgcgac
ctgatggccagcgcccagaccggtaccggtaagacggcgggctttaccctgccgctgctg
cagcgcctgattgacaaagagccgcacgcaaagggtcgccgcccggtgcgcgcgctgatc
ctgaccccgacccgtgagctggcggcgcaggtgggcgagaacgtccgcgattacagcaag
tacctgaatattcgctcgctggtggtattcggcggcgtgagcatcaacccgcagatgatg
aagctgcgcggtggcgtcgacatcctcgttgccaccccgggccgtctgctggacctcgaa
catcagaacgcggtcagccttgatagcgtggaaatccttgtgctggacgaagcggaccgc
atgctggatatgggctttatccatgacatccgtcgcgtactggctaaactgccggcgcgt
cgacagaacctgctgttctcggcgaccttctccgacgagatcaagggcctggccgagaaa
ctgctgcacaacccgctggaagtggaagtggcgcgtcgcaacaccgcgtccgagcagatc
acccagcacgtccatttcgttgataagaaccgcaagcgcgaactgttgtcgcagctgatc
ggcgaaggcaactggcagcaggtgctggtgtttacccgcaccaagcatggcgccaaccac
ctcgcggagcagcttaataaagacggcatccgcagcgcggcgatccatggcaacaagagc
cagggagcgcgtacccgcgcgctggccgactttaaatccggcggcattcgcgtgctggtg
gcgaccgatatcgccgcccgtggtctggatatcgaagagctgccgcacgtggtgaactac
gagctgccgaacgtaccggaagattacgtccaccgtatcggccgtaccggccgcgcggcg
gccaccggtgaagccttgtcgctggtgtgcgtggatgagcataagctgctgcgcgatatc
gagcgcctgctgaaaaaagagatcccgcgcatcgcgattgccggctatgagccggatccg
tccattaaagccgaacctatccagaacggtcgccagcagcgcggcggcggtcgtgggcaa
ggtcagggacgcggtggccagggtcagggacgcagcggacagccgcgcagccagaacagc
gccccgcgccgtcaggacggcgaggcgccgaaagcgcgtacgccggacggcaaaccgccg
cgccgccgtcgtccgcgtaaaccggctggcgaataa
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