Klebsiella variicola At-22: Kvar_4876
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Entry
Kvar_4876 CDS
T01170
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kva
Klebsiella variicola At-22
Pathway
kva03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kva00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Kvar_4876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kva03021
]
Kvar_4876
03400 DNA repair and recombination proteins [BR:
kva03400
]
Kvar_4876
Enzymes [BR:
kva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Kvar_4876
Transcription machinery [BR:
kva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Kvar_4876
DNA repair and recombination proteins [BR:
kva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Kvar_4876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ADC60747
LinkDB
All DBs
Position
complement(5191010..5195233)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELACPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLRNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHLINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTSGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVAATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPA
APQVSVEEASANLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaagcctgagcgtgacggtctgttctgtgctcgt
attttcgggccagtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacatcgagctggcatgcccgacggcgcacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgtgtactgtac
ttcgaatcctacgtggttatcgaaggtggcatgaccaacctcgaacgcaaccagattctg
actgaagagcagtacctggatgcgctggaagagttcggtgacgaattcgacgcgaaaatg
ggtgcggaagcgatccaggcgctgctgcgcaatatggatctggagcaggaatgcgaacag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgc
attaagctgctggaagcgttcgttcagtctggcaacaagccggaatggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctcgatggcggccgtttt
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atttacggcaagctggaactgcgtggcctggccaccaccatcaaagccgctaagaaaatg
gttgagcgcgaagaagccgttgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcgccaacgctgcaccgtttaggtatccaggcattcgaaccggtt
ctgatcgaaggtaaagctattcagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggcgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagcggagcgtatttatcgcgccggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatacgaaaaagacgagaat
ggtgaattcgtcgcgaagactagcctgaaagacacgaccgttggccgtgccattctgtgg
atgatcgtaccgaaaggtctgccgttctctatcgtgaaccaggcgctcggtaagaaagcg
atctccaagatgctgaacacctgttaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
atcgatgacatggtcatcccggagaaaaaatacgaaatcatcagcgaagcggaagcggaa
gttgctgagattcaggaacagttccagtctggtctggtcaccgcgggcgagcgctacaac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgtgattaaccgtgacggtcaggaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gctggtatgcgtggtctgatggcgaagccggatggctcgatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgcgcgt
aaaggtctggcggataccgcactgaagacagcgaactccggttacctgactcgtcgtctg
gttgacgttgcccaggacctggtcgtcactgaagacgactgcggcaccctggaaggcatc
accatgacgccggttatcgaaggtggcgacgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtgactgctgaagacgttctgaagccgggtaccgcggacattctggttccacgc
aacacgctgctgcatgagcactggtgtgacctgctggaagagaactccgttgactccgtc
aaagttcgttccgttgtatcctgtgataccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacctcatcaacaaaggtgaggctatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctg
agcaacgcgaagtcggttgtgaactccagcggtaaactggttatcacctcgcgtaacacc
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggc
tccgttatggcgaaaggcgatggcgaacaggttgccggcggtgaaaccgttgcaaactgg
gatccgcataccatgccggttatcaccgaagtgagtggtttcgtccgcttcactgacatg
atcgacggccagaccattactcgtcagaccgacgaactgaccggtctgtcttcgctggtg
gttctggattccgcagaacgtacctccggtggtaaagatctgcgtccggcgctgaaaatt
gttgatgctcagggcaacgacgttctgatcccaggcaccgatatgccggctcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcgtacagatcagctctggtgacacc
ctggcgcgtgttccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggcatcatttccttcggtaaagaaaccaaagggaaacgtcgtctggttatcaccccggta
gacggtagcgaaccgtacgaagagatgattccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcaccgcacgacatt
ctgcgtcttcgtggcgtgcacgcggtaacgcgttacatcaccaacgaagtgcaggacgtt
taccgtctgcaaggcgttaagattaacgataagcacattgaagttatcgttcgtcagatg
ctgcgtaaagcgaccatcgaaagtgctggtagctccgacttcctcgaaggcgagcaggtt
gaatactcccgcgttaagatcgctaaccgcgagcttgaagcgaatggcaaagtggcggca
acctattcccgcgacctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcctcgttccaggagaccactcgcgtgctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgtcatcgtgggtcgtctgatcccggcgggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgcagcgggcgaacagccagct
gctccgcaggtgagcgtagaagaagcgtctgccaacctggcagaactgctgaacgcaggc
ctgggcggttctgacaacgattaa
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integrated database retrieval system
