Klebsiella variicola DX120E: KR75_17590
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Entry
KR75_17590 CDS
T03531
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kvd
Klebsiella variicola DX120E
Pathway
kvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KR75_17590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvd03019
]
KR75_17590
03009 Ribosome biogenesis [BR:
kvd03009
]
KR75_17590
Enzymes [BR:
kvd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KR75_17590
Messenger RNA biogenesis [BR:
kvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KR75_17590
Ribosome biogenesis [BR:
kvd03009
]
Prokaryotic type
rRNA processing factors
KR75_17590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJA96597
LinkDB
All DBs
Position
3467959..3471198
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPA
PMLEEPVAAPAVAAAPVAAAAPAQPGLLSRFFSALKNIFSGTEEAKPVEVPVEKKAEEKP
ERQQERRKPRSNNRRDRNDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRR
NRREKQPQNVEARDARQTVGDDADKAKSRDEQQPRRERSRRRNDDKRQAQQEAKVQTREE
PEVQETEQEERVQTLPRRKPRQLSQKVRIESAVAEQTAEIAPETVVAEVAAPRSEPVKAE
LPAVAENVVEHDENGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA
CASPEMASGKVWIRYPVVRPQDQQPEEVPVQDTSAIEAIEAVATPVAVVETVTAAPVTVE
PAPMEPVTAEPVVVEPVVAAEPVIVDTPEIVEPAAVEPAPVEAPAVEAPQAIAPVTIDAE
PVTVEPEVVETAPVVEAPVETIVPATETVVEAPVTEAAPTAPAEPVKAETPVSKPVVVAG
DRHATAPMTRAPAPDYVPEAPRHSTWVRPPFAFEGKGAAGGHSATRKATAEPTRPQPVE
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaacctagccttgaagccgcgtttgtcgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccccgct
aactacaatgcgcacggtcgtcctaatatcaaagacgtgctgcgtgaaggtcaggaagtt
atcgtgcagattgataaagaagaacgcggcaacaaaggcgctgcgctcaccacctttatc
agcctggcaggcagctatctagtcctgatgccgaacaacccgcgcgcggggggaatttcc
cgccgtatcgagggcgacgaccgcactgaactgaaagaagcgctggcgagcctggagctt
ccggacggcatgggtcttatcgttcgcaccgctggcgtcggcaaatctgccgaagccctg
cagtgggacctgagcttccgcctgaagcactgggaagcgattcagaaagccgcggaaagc
cgtccggcgccgttcctgatccaccaggaaagcaacgtgattgtccgcgcattccgcgat
tatctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgctcgagctggcg
cgccagcatatcgccgcactgggtcgtccggatttcagtagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccattatcagattgaatcgcaaattgagtccgccttccag
cgtgaagtgcgcctgccttccggcgggtctatcgttatcgacagcaccgaagcgctgacc
gcgatcgatatcaactccgcccgcgccactcgcggcggcgatatcgaagagacagccttc
aataccaaccttgaagcggctgacgagattgcccgccagctgcgtctgcgcgacctcggc
ggcttgatcgttatcgactttatcgatatgaccccggttcgccaccagcgtgcggtggaa
aaccgtctgcgtgaagccgttcgtcaggaccgcgcgcgcattcagatcagccatatttcg
cgtttcggcctgctggagatgtctcgccagcgcctgagcccgtcgctgggcgaatccagc
catcacgtctgcccgcgctgctccggcaccggtaccgtgcgtgataacgagtcgctgtcg
ctctctattctgcgtctgattgaagaagaggcgctgaaagagaacaccaaagaagtccac
gccatcgttccggtaccgatcgcctcttatctgctgaacgaaaaacgtgccgcagtgagc
gcaatcgaatcccgtcagggcgatgtccgcgtcattatcgtgccaaacgacgagatgcag
acgccgcactactccgtcctgcgcgtgcgcaaaggtgaagagacctcaacgctgagctat
ctgctgccgaagctgcatgaagaagagatggcgctgcctggtgacgaggagccagcagaa
cgtaaacgtccggagcagcctgcgctggccgcctttgtgatgcctgacgccccaccggca
ccgatgctggaagagcctgtggctgcccctgcggtcgccgctgccccggtcgcggccgcc
gcgccggcccagccgggactactctcacgcttcttcagcgcgctgaaaaatatcttctct
ggcactgaagaagccaagccggttgaagttccggtcgagaagaaagcggaagaaaaaccg
gagcgtcagcaggagcgccgtaaaccgcggagcaacaaccgccgcgatcgcaacgaccgc
aacgatcgccgtgataaccgcgacaatcgtgacaaccgcgataaccgtgacaatcgcgac
acccgtgcggacaatgccgagggtcgtgagccgcgcgaatcgcgtgaagaaaaccgtcgc
aatcgtcgcgaaaagcagccgcaaaacgtagaagcgcgtgacgctcgccagaccgtcggc
gatgacgcggacaaagccaaatcccgcgacgagcagcagccgcgccgcgaacgctcccgc
cgccgcaatgacgataaacgtcaggcgcagcaggaagccaaggtgcagacgcgtgaagag
ccggaagtacaggagactgagcaggaagagcgtgtgcagaccctgccgcgtcgtaaaccg
cgtcagctctcccagaaagtacgcattgagtcagccgttgccgagcagactgccgagatc
gcgcctgagaccgttgtggctgaagtcgccgccccgcgcagcgagccggtgaaagccgaa
ctgccggcggtagcggaaaacgtagtggaacacgatgaaaacggcgaatcccgtgaagcg
aacggtatgccgcgccgctctcgtcgttccccgcgtcatctgcgcgtgagcggtcagcgt
cgtcgtcgctatcgtgacgaacgctatccgacccagtcgcctatgccgctgaccgtcgcc
tgcgcctcgccggagatggcttccggtaaagtctggatccgctacccggtcgttcgtccg
caggaccagcagccggaagaggttccggttcaggacaccagcgccattgaagccatcgag
gctgttgcgacaccggttgccgtggttgaaaccgtcactgccgcgccagttaccgtcgag
ccggcgcccatggagcccgttaccgctgaaccggtggtcgtcgaacctgtcgtagccgcc
gagccggtgatcgttgatactccggaaattgtcgagccagccgctgtcgagccagcgccg
gtcgaagcgccagctgtcgaagcgcctcaggctattgcgccagtgacgatcgacgccgag
ccggtcacagttgaacctgaagtggtggaaacggcgcctgtcgttgaagcgccagtggaa
accatcgttccggccacggaaaccgtggtggaggcaccggtgaccgaagccgcccctacg
gcccctgccgaaccggtcaaagctgaaacgccggtaagcaaacccgtggttgtggctggc
gatcgccatgctaccgcgccgatgacccgggcgcctgctccggactatgtcccggaagcg
ccgcgccacagcacctgggtccgcccgccgttcgcttttgaaggtaaaggcgccgccggt
ggtcatagtgcgacgcgtaaagccaccgcagaaccgacccgcccacagcccgtcgaataa
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