Ketogulonicigenium vulgare WSH-001: KVU_0603
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Entry
KVU_0603 CDS
T01909
Symbol
rne
Name
(GenBank) Ribonuclease E, putative
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kvl
Ketogulonicigenium vulgare WSH-001
Pathway
kvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KVU_0603 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvl03019
]
KVU_0603 (rne)
03009 Ribosome biogenesis [BR:
kvl03009
]
KVU_0603 (rne)
Enzymes [BR:
kvl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KVU_0603 (rne)
Messenger RNA biogenesis [BR:
kvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KVU_0603 (rne)
Ribosome biogenesis [BR:
kvl03009
]
Prokaryotic type
rRNA processing factors
KVU_0603 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Rib_recp_KP_reg
DnaJ_CXXCXGXG
TrAA12
Motif
Other DBs
NCBI-ProteinID:
AEM40442
UniProt:
F9Y3S8
LinkDB
All DBs
Position
651534..654323
Genome browser
AA seq
929 aa
AA seq
DB search
MSKKMLIDATHAEETRVVVVDGNKVEDFDFERAAKRQLSGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPSYYQIPVADREALLAEEMADAHADSDDVSPADDQPTDEKSGEKS
GGRGRRVRRSRTSTGTGPRPAQARGDAVATQELTEGDAASAPAGMEVIDLEAEGDDPSEG
LSPMVTVAETPVETPAAEAAADDEDEDDTPDPAHEVETISADDSDDVRPVRKTRMRRYKI
QEVIKVRQVMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNVADRK
KLKEIAQELEVPQGAGLIIRTAGSQRTKAEIKRDYEYLMRLWEQIRALTLSSNAPAKIYE
EGDLIKRSIRDLTSTEIDEVIVEGDEGFRTAYDFMKMMMPGQERSVIHYHDQMPLFARYQ
VEGYLGGMFNPVVQLPSGGYIVIGVTEALVAIDVNSGRATKEGSIEQTATKTNLEAADEI
ARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRFRDKLKDDRARIQVGRISGFGLLEMSRQ
RLRPGMIEATTQPCSHCHGTGLLRSDDNLGLTIIRQLEEEGVRGRSREVVVHAPVGIVNF
LMNQKREHIAGIEQRYGMSVRVEADITLVSPDYSIEKLKAATRVVQAAPAAPTVVTGTAE
LMEEIIAAEVIEDDIAVVEEEAVAAAPVQTPEGEDDRPRKKRRRRRRRRGNGEGNGTLDG
DALSGDDEGDEDGDDEAVATVAPVELAVETPVAPVVAQPVVAAPVEVVAEEAPAPVEKPK
RRTRKKPVAEAAAPEVAAEGAEDAPVVAEVAEAVAEKPKRRTRSKKVEAPVEVAAEAAVA
VDAEAPAPKPRRSRKKPVAEAAVEAVADAPVAVEAAPVAVAEPAREATVEPVVVTPALTP
VPAAPVVTPEPEAAPDAAAKPKRSGWWSK
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaaatgcttatcgatgccacccacgcggaggaaacccgcgttgtggtggtc
gacggaaacaaggtcgaggatttcgactttgaacgcgctgccaaacggcagctttcaggc
aatatctaccttgcaaaagtaacgcgggtcgagccttcgctgcaggcggctttcgtcgat
tacggcggcaaccgtcacggatttctggcttttgcggaaattcaccccagctattaccag
atccccgttgccgaccgcgaggcgctgctggccgaggaaatggccgatgcccatgccgat
agcgacgatgtcagccccgccgatgatcagccgaccgatgaaaaatcgggggaaaaatcg
ggtggccgtggccgccgcgtgcgccgcagccgcaccagcacgggtactggcccgcgtcct
gcacaggcacgcggtgatgctgtcgcgacccaagagctgaccgagggcgatgccgcatcc
gcgcccgccggtatggaggtcatcgacctcgaggccgagggtgatgatccctccgagggt
ctgtcgccgatggtgacggtcgccgagactccggtcgagacgcccgcagccgaggctgct
gccgatgatgaggacgaggacgacacacccgatcccgcccacgaggtcgagacgatctct
gcggacgacagcgacgatgtgcgccccgtgcgcaagacccgtatgcgtcgctataagatc
caggaagtgatcaaagtgcgccaggtgatgctggtgcaagtggtcaaggaagaacgcggc
aacaaaggcgcggcgctgacgacttatctgtcgctggcgggccgttactgcgtcctgatg
ccgaacaccgcgcgcggtggcggcatcagccgcaagatcaccaatgtcgccgaccgcaaa
aagctgaaggaaatcgcgcaagagctggaagtgccgcaaggcgctggcctgatcatccgc
accgccggatcgcagcgcaccaaggccgagatcaagcgcgactacgaatatctgatgcgc
ctgtgggaacagatccgcgcgttgacgctgtcctcgaatgcgcccgcgaagatctatgaa
gaaggcgatctgatcaaacgctcgatccgcgacctgacctcgaccgagatcgacgaggtg
atcgttgagggcgacgagggcttccgcaccgcctatgatttcatgaaaatgatgatgccg
gggcaagagcgttcggtcatccattaccacgatcagatgccgctgttcgcgcgctatcag
gtcgaggggtatctgggcggcatgttcaacccggtcgtgcaactgccctcgggcggctat
atcgtgatcggcgtgaccgaggcgctggtggccatcgacgtgaactcgggccgcgccacg
aaagaaggctcgatcgagcagaccgcgacgaaaaccaaccttgaggctgccgacgagatc
gcccgccagctgcgcctgcgcgacttggccggtctgatcgtgatcgactttatcgacatg
gacgagcgcaagaacaacgccgccgtcgaaaagcgcttccgcgacaagttgaaagacgac
cgtgcccgcatccaagtcggccgcatctcgggctttggcctgctagagatgagccgtcag
cgtctgcgtcccggcatgatcgaggcgacgacccagccgtgcagccattgccacggcacc
ggccttctgcgttcggacgacaacctgggtctgacgatcattcgccagctcgaggaagag
ggcgtccgtgggcgcagccgcgaagttgtggtgcatgcgcccgtcggcatcgtgaacttc
ctgatgaaccaaaagcgcgaacatattgccggcatcgaacagcgttacggcatgtccgtg
cgggtcgaggcggatatcacgctggtgtcgcccgattattccattgaaaaactgaaagcc
gcaacgcgcgttgtgcaagctgcgcctgctgcgccgaccgttgtgaccggcacggccgag
ttgatggaagagatcatcgcggccgaggtcatcgaggacgatatcgctgtcgtcgaggaa
gaggcagtcgccgctgcgcccgtgcagacccccgagggtgaagatgatcgcccgcgcaaa
aagcgtcgtcgtcgtcgtcgtcgtcggggcaatggcgagggcaacggcacgctggatggc
gatgctttgtctggcgatgacgaaggtgacgaggatggcgatgacgaggctgttgccaca
gtcgcgcctgtagagctcgccgtcgagacgcctgttgcgccagttgtagcgcagccagtg
gtcgccgcgcctgtcgaggtcgtagccgaagaagctccggcgccggtcgaaaagcccaag
cgccgcacgcgcaaaaagccagtggctgaagctgctgcgcctgaagtcgctgccgaaggt
gccgaagatgcgccggtcgttgcggaagtagccgaagctgtcgccgaaaagcccaagcgc
cgtacgcgtagcaagaaggtcgaggctccggtcgaagtcgcagccgaggcagctgttgcc
gtcgacgctgaggcacccgcgccaaagccgcgccgcagccgtaaaaagccagtggctgag
gctgctgtcgaagctgtggctgatgcgccggttgccgtcgaggctgcacctgtcgcggtg
gcggaacctgcgcgagaagcaacggttgagccggtcgtcgtgacccctgcgctcacgcct
gtgccagcggcacccgtcgtgacccctgaaccagaggcggccccggatgcggcggccaag
ccaaaacgctctggctggtggagcaagtaa
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