Ketogulonicigenium vulgare WSH-001: KVU_2420
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Entry
KVU_2420 CDS
T01909
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kvl
Ketogulonicigenium vulgare WSH-001
Pathway
kvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KVU_2420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvl03019
]
KVU_2420
Enzymes [BR:
kvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KVU_2420
Messenger RNA biogenesis [BR:
kvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KVU_2420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_30
AAA_19
Flavi_DEAD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AEM42259
UniProt:
F9Y769
LinkDB
All DBs
Position
2569937..2571217
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AA seq
426 aa
AA seq
DB search
MDFDMLGLSPRLTKALAELGITEPTPIQAQAIPHAMNGRDVLGLAQTGTGKTAAFGLPMI
DALIKDSRRAQAKGARALVLAPTRELAKQIAENLAAYTKDSHLKTVVVTGGAGIGGQIQR
MERGTAILVATPGRLIDLLDRKAIDLSQTEFLVLDEADQMLDLGFIHALRRIAPLLPANR
QTMLFSATMPKQMEELAASFLSNPIRVQVNPPGQAATKITQSVHFVASRAKTDLLIELLD
AHRDELALVFGRTKHGMEKLAKQLENAGYAVAAIHGNKSQGQRDRALRDFRAGTLRVLVA
TDVAARGLDIPDVRYVYNYELPNVPDNYVHRIGRTARAGKDGQAVAFCAPDEMGDLRDIQ
KVMKTTIPVASGAPWEVPADGGGAKKGPAGRRPFKGNGGGKPKGDFGRPQGQGQRRGGRP
QAKSAA
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgatatgctgggcctttcgcccagactgactaaagctttggctgaacttggc
attactgaaccgacacctattcaggcgcaggcgatcccgcatgcaatgaacggtcgcgac
gtgctgggccttgcgcagaccggcaccggcaagaccgcggctttcggcctgccgatgatc
gatgcgttgatcaaggattcgcgccgtgcgcaggccaaaggcgcccgtgcgctggtgctg
gcccccacgcgcgagctggccaagcagatcgctgaaaaccttgcggcctataccaaggat
tcgcacctgaagaccgtcgtcgtcacgggcggcgcgggcatcggtggtcagatccagcgc
atggagcgtggcaccgccattttggttgccacccccggccgcctgatcgaccttctggac
cgcaaggccatcgacctgtcgcagaccgagtttctggtgctggacgaggctgaccagatg
cttgatctgggctttatccatgcgctgcgccgtattgcgccgctgctgcctgcaaaccgt
cagacgatgctgttctcggccactatgcccaagcagatggaagagctggcggcgtcgttc
ttgtccaacccgatccgcgttcaggtgaacccgccgggtcaggccgcgaccaagatcacg
caatcggtgcactttgtcgcctcgcgcgccaagactgatctgctgatcgagctgctggat
gcgcaccgtgacgagctggcgctggtttttggccgcaccaagcacggcatggaaaagctg
gccaagcagttggaaaacgcgggctatgccgtcgctgcgatccacggcaacaaaagccaa
ggtcaacgcgaccgtgcgctgcgcgatttccgcgcgggcacgttgcgtgtgctggtggcg
actgatgtggccgcacgcggtctggatattccggatgtgcgctacgtgtataactacgag
ctgccgaatgtgccggacaactatgtccaccgcattggccgtaccgcgcgtgcgggcaag
gacggtcaggccgtcgccttctgtgcacctgacgagatgggcgatctgcgcgacatccaa
aaggtgatgaagacgacgatccccgtcgcttcgggcgcaccgtgggaagtcccggcggat
ggcggtggtgccaaaaaaggcccagccggtcgtcgccccttcaaaggcaatggcggtggc
aagcccaagggtgatttcggtcgcccacagggccagggccaacgtcgtggtggccgtccg
caggccaaatccgcagcataa
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