Ketogulonicigenium vulgare WSH-001: KVU_PB0116
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Entry
KVU_PB0116 CDS
T01909
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kvl
Ketogulonicigenium vulgare WSH-001
Pathway
kvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KVU_PB0116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvl03019
]
KVU_PB0116
03009 Ribosome biogenesis [BR:
kvl03009
]
KVU_PB0116
Enzymes [BR:
kvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KVU_PB0116
Messenger RNA biogenesis [BR:
kvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KVU_PB0116
Ribosome biogenesis [BR:
kvl03009
]
Prokaryotic type
rRNA helicases
KVU_PB0116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DUF3755
Motif
Other DBs
NCBI-ProteinID:
AEM42794
UniProt:
F9YBP2
LinkDB
All DBs
Position
p2:125218..127305
Genome browser
AA seq
695 aa
AA seq
DB search
MLPDKRDGSVPPALFRAHLGRIVLTHQNIAAPLAAALSQRGYETLTAVQQAVLAPEADGR
DLLVSAQTGSGKTVAFGIAVAPDLLGDDNILPLNTPPVALFIAPTRELALQVAQELTWLY
ANAGAQIATCVGGMDYRTERRALARLPQIVVGTPGRLRDHIDRGGLDLSELRVTVLDEAD
EMLDLGFRDDLQYILQAAPEDRRTLMFSATVPREIEKLARDFQNDALRLETRGEAKQHND
ISYQALSVTMRDRENAIFNMLRFYESRTAIIFCKTRANVNDLLSRMSGRGFRVVALSGEL
SQQERTNALQALRDGRANVCIATDVAARGIDLPGLELVIHYDLPTNAETLLHRSGRTGRA
GAKGVSALIVTPGDFKKAQRLLSFAKVTAEWGKAPSAEEVSARDDLRMVEHPALTTKLDD
MTVANDLLARFGAEQISAAFVQLWREGRPAPEALTVVNTPTPGAAPAPREPRTSPREFGA
SVWFSLSAGHVDRAEARWLLPKICDAGGITRDAIGAIRVRESETFVQIAANEAGRFANVS
EIEPGLTLTQIDGEPNLEQRSSGPKKFGAGKPGKFAKGGESWGDKKQTGWVERKNDGWDD
KPAPKKHRKGEFEAGMADAPAAAPRKPRFDDAPAATKTARIKPRWTEEQPSFKAKRPSAA
GAPAKPRDGAKPAFKGKPYAANTTGGAPRKSKFKA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgttgcccgataagagagacggttcagtccctcccgccctatttagggcccatttaggc
agaatagttttgactcatcaaaatatcgccgcgcctctggccgcggccctttcgcaacgt
ggatatgaaacgctgaccgccgtgcagcaagctgtgcttgcgcccgaggctgatggccgc
gacctgctggtgtcggcacagaccggttcgggtaagacggtggcctttggtatcgcagtc
gcgcccgaccttttgggcgacgacaatatcctgccgctgaacacgccgcctgttgcgctg
ttcatcgcccccacgcgcgagcttgcgctgcaagttgctcaggaactgacctggctttac
gccaatgcaggtgcccagatcgcgacctgcgtcggcggtatggattaccgcaccgagcgc
cgcgcccttgcacgtctgccgcaaatcgttgtcggcacgcccggccgtctgcgcgaccat
atcgaccgtggcggccttgacctgtccgaattgcgcgtgaccgtgctggacgaagcggat
gagatgctcgacctcggcttccgcgatgatctgcaatatatcttgcaagccgcgcccgaa
gatcgccgcacgctgatgttctcggccaccgtgccgcgcgagattgaaaaactggcccgc
gacttccaaaatgacgccctgcgtctggaaacccgtggcgaggccaagcagcacaacgac
atcagctaccaagctttgtcggtcaccatgcgcgatcgcgaaaacgccattttcaacatg
ctgcgtttttatgaatcgcgcacggcgatcatcttctgcaagacccgcgccaatgtgaat
gatctgctgtcgcggatgagcggtcgtggcttccgcgtggtggccctgtcgggcgagctg
tcgcaacaggaacgcaccaacgcgctgcaagcgctgcgtgatggccgcgccaacgtttgt
atcgcgaccgacgtcgcggcgcgcggcattgacttgccgggcctcgagctggtgatccac
tacgatctgccgaccaatgccgaaaccctgctgcaccgctcgggccgtaccggccgcgcg
ggtgccaagggcgtctcggcgctgatcgtcacccccggcgatttcaaaaaagcgcagcgt
ttgctgagctttgccaaagtgaccgcggaatggggcaaggcgccttcggccgaagaagtc
agcgcccgcgacgatctgcgcatggtcgagcatccggccctgaccaccaagctggatgat
atgactgtcgcgaatgatctgctggcccgatttggtgccgagcaaatctctgccgcattc
gtccaactgtggcgcgaaggtcgccccgcccccgaggcgctgaccgtcgtgaacacgccc
acccccggtgccgcccccgccccgcgcgagccgcgtacctcgccgcgcgaatttggcgcg
tcggtctggttcagcctgtcggcaggtcacgtcgaccgcgccgaagcccgttggctgctg
ccgaaaatctgtgatgcgggcggtatcacccgcgatgcgatcggtgcgatccgcgtgcgc
gagtccgagacctttgtgcagatcgcggccaatgaagcgggccgtttcgccaatgtctcg
gaaatcgagcctggcctgacgctgacgcaaatcgacggcgagccgaacctggaacagcgc
agcagcggcccgaagaaattcggcgcaggcaagcccggtaaattcgccaagggcggtgag
agctggggcgataaaaagcagaccggctgggtcgagcgcaagaacgacggctgggacgac
aagcccgcgccgaaaaagcatcgcaagggcgagtttgaggccggcatggccgatgcaccc
gccgcagcgccgcgcaagccgcgtttcgatgacgcccccgccgcgaccaaaaccgcacgg
atcaagccgcgttggaccgaagaacagcccagcttcaaggccaagcgccccagcgccgca
ggcgcaccggccaagccgcgtgatggcgcaaagcccgcgttcaaaggcaagccctatgcc
gcgaacaccaccggcggcgcgccgcgcaaaagcaagttcaaggcctga
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