Klebsiella variicola DSM 15968: SP68_00790
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Entry
SP68_00790 CDS
T03641
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kvq
Klebsiella variicola DSM 15968
Brite
KEGG Orthology (KO) [BR:
kvq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvq03019
]
SP68_00790
Enzymes [BR:
kvq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SP68_00790
Messenger RNA biogenesis [BR:
kvq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SP68_00790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
Ubiquitin_3
SLFN-g3_helicase
AAA_23
TsaE
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AJE87853
LinkDB
All DBs
Position
complement(2958963..2962865)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKITFPQLYQQLDGLMLRDKTRFARRLHGVKKVKNPESQQAILQEMAQEISQAAGK
VLLREAARPAITYPENLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
LKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNHAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGE
REIRDTADALNKLDLRHTEVLPLYARLSNSEQNRVFQPHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNYLRVREWQDIYTQ
LRQVVKELGLPINSEPAEYREIHTALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVGARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEIEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDAWWKQASRETPDLLNFEKSMLIKEGA
EQVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEEAGFEWQIPGLRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRATPLELPLLDSLERELRKMTGVTIDREAW
LWDQVPDHLKITFRVVDDKNKKLQEGRSLQALKDALKGKVQETLSAVADDGIEQSGLHIW
SFGTLAESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQAMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGGPVWTEEGFSQLHDK
VRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMAGLVYRGFVTG
NGFRRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKIESVQQAWQQWLNKLPPNRREDDD
VREIRWMIEELRVSFFAQQLGTPYPISDKRVLQAMEQITP
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaaatcaccttcccccagctttatcaacagctcgacggcctgatg
ctgcgcgacaaaacgcgcttcgcccgccgtctgcacggcgtgaagaaggttaaaaatcct
gaatcgcaacaggccatcctccaggagatggcgcaggagataagccaggcagccggtaaa
gtcctgctgcgcgaagcggcgcgtccggccatcacctatcctgaaaacctgccggttagc
cagaaaaaacaagagattctcgaggcggtgcgcgatcaccaggtggtgatcgtcgccgga
gagaccggttcgggtaaaaccacccagctgccaaaaatctgcatggagctgggccgcggg
ctgaaagggctgatcggccatacccagccgcgtcgtctggccgcgcgaaccgtcgccaac
cgtatcgccgaggagctgcaaacggagccgggcggttgcatcggctataaagtccgcttt
agcgatcacgtcagcgacaacaccatggtcaagctgatgaccgacggtattctgctggcg
gagatccagcaggatcgcctgctgatgcagtacgacaccatcattatcgatgaagcgcac
gagcgcagtctgaacattgattttctgctcggctatctgaaagagctcctgccgcgccgc
ccggacctgaaaatcatcattacctcggcgaccatcgacccggaacgtttctcaaagcat
ttcaatcatgcgcccattatcgaagtctccgggcggacttacccggtggaagtccgctac
cggccgatagtggaagaggcggacgacaccgagcgcgatcaattacaggcgatttttgat
gcggttgacgaactggggcgcgaagggcccggcgatattctgatctttatgagcggtgag
cgggaaattcgcgataccgctgatgcgctgaataagctggatctgcgccatactgaagtg
ctgccgctgtatgcccgcctgtccaacagcgagcagaaccgcgtcttccagccgcacagc
ggacgacgcatcgtgctggcgaccaacgtggcggaaacttcgctgaccgtgccgggcatt
aaatacgttatcgatcccggtactgcgcgtatcagccgttacagctaccgcaccaaggtg
cagcgcctgccgatcgagccggtttcccaggcgtccgccaaccagcgtaagggccgctgc
ggccgcgtttcggaagggatctgtattcgtctttattcggaagacgatttcctgtcgcgc
ccggagtttactgacccggaaattctgcgtaccaacctggcgtcggtcatcctgcagatg
accgccctgggcttaggcgatatcgccgccttcccgtttgtcgaagcgccggataagcgc
aatatccaggacggcgtgcgcctgctggaagagctgggcgccatcaccaccgatgagcag
gccaccgcctataagctgacgccgatgggccgccagctcagccaactgccggtggatccc
cgtctggcgcgcatggtgctggaggcgcagaagcacggctgcgtgcgggaagcgatgatc
atcacctccgcgctgtcgattcaggacccgcgcgagcggccgatggacaaacagcaggcc
tccgatgagaagcaccgccgtttccacgataaagagtccgatttcctcgccttcgtcaat
ctgtggaactaccttggcgagcagcagaaggcgctgtcgtcgaatcagttccgccgccag
tgccgggtcgattttcttaactatctgcgcgtgcgcgagtggcaggacatctacacccag
ttgcgccaggtggtgaaagagctcggcctgccgatcaacagcgagccggcggaatatcgc
gagatccataccgcgttgctgaccggtttgctgtcgcacatcggcatgaaggatgccgat
aagcaggagtttaccggcgcgcgcaacgcccgcttctccatcttcccgggttccggtttg
tttaaaaagccgccaaaatggacgatggtggcggaactggtggaaaccagccggctgtgg
gggcgcatcgccgcccgcattgagccggagtgggttgagccggtcgcgcagcacctgatc
aagcgctcatacagcgaaccgcactgggagcgggcgcagggcgcggtgatggcgacggag
aaggtcaccgtctacggcctgccgatcgttggcgcacgcaaggtcaactacagccagatc
gacccggcgctgtgccgcgaactgtttatccgccacgcgctggtggagggcgactggcag
acgcggcatgccttcttccgggaaaacctgaagctgcgggcggaaatcgaagagctggag
cataaatcgcgccgccgcgacatcctggtggatgacgaaaccctgttcgagttctacgac
cagcgcattagccacgacgtcatctccgcccgtcattttgatgcctggtggaagcaggcc
agccgcgaaacgccagacttgctcaattttgaaaagagcatgctgattaaagaaggggcg
gagcaggtcagcaagctggactatccgaacttctggcatcagggcaacctcaagctgcgg
cttagctaccagtttgaaccgggcgccgatgccgatggcgtgacggtgcatattccgctg
ccgctgctgaaccaggtggaggaggccggatttgagtggcagatccccggcctgcgtcgc
gagctgattatcgcgctgataaaatcgctgccgaagccggtgcggcgcaatttcgtcccg
gcccctaactatgcggaagcgtttctcggccgggcgacgccgcttgagctgccgctgctt
gattcgctggagcgtgagctgcgtaagatgaccggcgtgaccatcgaccgcgaggcctgg
ctgtgggatcaggtgcccgatcacctgaaaatcaccttccgggtggtggatgacaaaaac
aagaagcttcaggaagggcgctcgctgcaggcgttgaaagacgcgctgaagggcaaagtt
caggagacgctgtcggcggtggccgatgacggcatcgagcagagcgggctgcatatctgg
agctttggtacgctggcggaaagttacgaacagaaacgcggcaactataaggtgaaagcc
tggccggcgctggtggacgagcgcgacagcgtggctatcaagctgtttgataatccacag
gaacagcagcaggccatgtggcgtggtctgcgccgcctgctgctgctcaacatcccgtcg
ccaattaagtatctgcacgaaaaactgccgaacaaagccaagcttgggctctattttaac
ccgtacggtaaagtgctggatctgattgacgattgcatctcctgcggcgttgataagctt
atcgacgaggcgggtggtccggtgtggacggaagagggcttcagtcaattgcacgataaa
gtgcgagccgagctcaacgacacggtggtggagatcgctaaacaggtcgagcagatcctc
accgcggtgttcaatatcaacaaacggctgaaaggccgcgtggatatgaccatggcgctg
gggctgtcggatatcaaagcgcagatggcgggtctggtgtatcgcggttttgtcaccggc
aacggtttccgccgtcttggcgatacgctgcgttatctgcaggcgattgaaaagcgtctc
gagaagatggctatcgatccgcaccgcgatcgcgcacagatgctgaaaattgagagcgtg
cagcaggcgtggcagcagtggctgaataagctgccgccgaaccgccgtgaggacgacgat
gtccgggagatccgctggatgatcgaggaattgcgcgtgagcttcttcgcccagcagctg
ggcaccccgtatcctatctcggacaaacgcgtcctgcaggcgatggagcagatcacgccg
taa
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