Klebsiella variicola DSM 15968: SP68_23955
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Entry
SP68_23955 CDS
T03641
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kvq
Klebsiella variicola DSM 15968
Pathway
kvq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SP68_23955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvq03019
]
SP68_23955
03009 Ribosome biogenesis [BR:
kvq03009
]
SP68_23955
Enzymes [BR:
kvq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SP68_23955
Messenger RNA biogenesis [BR:
kvq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SP68_23955
Ribosome biogenesis [BR:
kvq03009
]
Prokaryotic type
rRNA processing factors
SP68_23955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJE92173
LinkDB
All DBs
Position
3489028..3492267
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPA
PMLEEPVAAPAVAAAPVAAAAPAQPGLLSRFFSALKNIFSGTEEAKPVEVPVEKKAEEKP
ERQQERRKPRSNNRRDRNDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRR
NRREKQPQNVEARDARQTVGDDADKAKSRDEQQPRRERSRRRNDDKRQAQQEAKVQTREE
PEVQETEQEERVQTLPRRKPRQLSQKVRIESAVAEQTAEIAPETVVAEVATPRSEPVKAE
LPAVVENVVEHDENGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA
CASPEMASGKVWIRYPVVRPQDQQPEEVPVQDTSAIEAIEAVATPVAVVETVTAAPVTVE
PATMEPVTAEPVVVEPVVAAEPVIVDTPEIVEPAAVEPAPVEAPAVEAPQAIAPVTIDAE
PVTVEPEVVETAPVVEAPVETIVPATETVVEAPVTEAAPTAPAEPVKAETPVSKPVVVAG
DRHATAPMTRAPAPAYVPEAPRHSTWVRPPFAFEGKGAAGGHSATRKATAEPTRPQPVE
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaacctagccttgaagccgcgtttgtcgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccctgct
aactacaatgcgcacggtcgtcctaatatcaaagacgtgctgcgcgaaggtcaggaagtt
atcgtgcagattgataaagaagaacgcggcaacaaaggcgctgcgctcaccacctttatc
agcctggcaggcagctatctggtcctgatgccgaacaacccgcgcgcgggaggcatttcc
cgccgtatcgagggcgacgaccgtactgaactgaaagaagcgctggcgagcctggagctt
ccggacggcatgggtcttatcgttcgcaccgctggcgtcggcaaatctgccgaagccctg
cagtgggacctgagcttccgcctgaagcactgggaagcgattcagaaagccgcggaaagc
cgtccggcgccgttcctgatccaccaggaaagcaacgtgattgtccgcgcattccgcgat
tatctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgctcgagctggcg
cgccagcatatcgccgcactgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccattatcagattgaatcgcaaattgagtccgccttccag
cgtgaagtgcgcctgccttccggtgggtctatcgttatcgacagcaccgaagcgctgacc
gcgatcgatatcaactccgcccgcgccacccgcggcggcgatatcgaagagacagccttc
aataccaaccttgaagcggctgacgagattgcccgccagctgcgtctgcgcgacctcggc
ggcttgatcgttatcgactttatcgatatgaccccggttcgccaccagcgtgcggtggaa
aaccgtctgcgtgaagccgttcgtcaggaccgcgcgcgcattcagattagccatatttcg
cgcttcggcctgctggagatgtctcgccagcgcctgagcccgtcgctgggcgaatccagc
catcacgtctgcccgcgctgctccggcaccggtaccgtgcgtgataacgaatcgctgtcg
ctctctattctgcgtctgattgaagaagaggcgctgaaagagaacaccaaagaagtccac
gccatcgttccggtaccgatcgcctcttatctgctgaacgaaaaacgtgccgcagtgagc
gcaatcgaatcccgtcagggcgatgtccgcgtcattatcgtgccaaacgacgagatgcag
acgccgcactactccgtcctgcgcgtgcgcaaaggtgaagagacctcaacgctgagctat
ctgctgccgaagctgcatgaagaagagatggcgctgcctggtgacgaggagccagcagaa
cgtaaacgtccggagcagcctgcgctggccgcctttgtgatgcctgacgccccaccggca
ccgatgctggaagagcctgtggctgcccctgcggtcgccgctgccccggtcgcggccgcc
gcgccggcccagccgggactgctctcacgcttcttcagcgcgctgaaaaatatcttctct
ggcactgaagaagccaagccggttgaagttccggtcgagaagaaagcggaagaaaaaccg
gagcgtcagcaggagcgccgcaaaccgcggagcaacaaccgccgcgatcgcaacgaccgc
aacgatcgccgtgataaccgcgacaatcgtgacaaccgcgataaccgtgacaatcgcgac
acccgcgcggacaatgccgagggtcgtgagccgcgcgaatcgcgtgaagaaaaccgtcgc
aatcgtcgcgaaaagcagccgcaaaacgtagaagcgcgtgacgctcgccagaccgtcggc
gatgacgcggacaaagccaaatcccgcgacgagcagcagccacgccgcgaacgctcccgc
cgccgcaatgacgataaacgtcaggcgcagcaggaagccaaggtgcagacgcgtgaagag
ccggaagtacaggagactgagcaggaagagcgtgtgcagactctgccgcgtcgtaaaccg
cgtcagctctcccagaaagtacgcattgagtcagccgttgccgagcagactgccgagatc
gcgcctgagaccgttgtggctgaagtcgccaccccgcgcagcgagccggtgaaagccgaa
ctgccggcggtagtggaaaacgtagtggaacacgatgaaaacggcgaatcccgtgaagcg
aacggtatgccgcgccgctctcgtcgttccccgcgtcatctgcgcgtgagcggtcagcgc
cgtcgtcgctatcgtgacgaacgctatccgacccagtcgcctatgccgctgaccgtcgcc
tgcgcctcgccggagatggcttccggtaaagtctggatccgctacccggtcgttcgtccg
caggaccagcagccggaagaggttccggttcaggacaccagcgccattgaagccatcgag
gctgttgcgacaccggttgccgtggttgaaaccgtcactgccgcgccagttaccgtcgag
ccggcgaccatggagcccgttaccgctgagccggtggtcgtcgaacctgtcgtagccgcc
gagccggttatcgttgatactccggaaattgtcgagccagccgctgtcgagccagcgccg
gtcgaagcgccagctgtcgaagcgcctcaggctattgcgccagtgacgatcgacgccgag
ccggtcacggttgaacctgaagtggtggaaacggcgcctgtcgttgaagcgccagtggaa
accatcgttccggccacggaaaccgtggtggaagcaccggtgaccgaagccgccccaaca
gcccctgccgaaccggtcaaagctgaaacgccggtaagcaaacccgtggttgtggctggc
gatcgccatgctaccgcgccgatgacccgggcgcctgctccggcctatgtcccggaagcg
ccgcgccacagcacctgggtgcgcccgccgttcgcttttgaaggtaaaggcgccgccggt
ggtcatagtgcgacgcgtaaagccaccgcagaaccgacccgcccacagcccgtcgaataa
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