Klebsiella variicola DSM 15968: SP68_24100
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Entry
SP68_24100 CDS
T03641
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kvq
Klebsiella variicola DSM 15968
Pathway
kvq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kvq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SP68_24100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kvq03400
]
SP68_24100
Enzymes [BR:
kvq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SP68_24100
DNA repair and recombination proteins [BR:
kvq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SP68_24100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJE92202
LinkDB
All DBs
Position
3459305..3462751
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPAKAGDLRQLGELTGAACATLVAEMAERHKGPVVLVAPDMQNALRLNDEIR
QFTDSMVMGLADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEFPTDQTAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPASTLIVNTGDLEASAERFQNEAR
ARFENRGVDPMRPLLSPELLWLRSDELFGELKKWPRVQLKTERLADKAANTNLGYQTLPD
LAVQAQNKAPLDNLRRFLESFTGPVIFSVESEGRREALSEMLARIKIAPKHVLRLEEATG
NGRYLMIGAAEHGFIDSQRGLALICESDLLGERVARRRQDSRRTINPDILIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDARLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILRETLRGGQVYYLFNDVENIQKAADKLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNELDLEEIKVELIDRFGRLPDAARNLLDIARLRQQAQKLGIRKLES
NEKGGVIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLEERKTRMDWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgatactcattgccggccaaagccggtgatctgcgccagcttggc
gagttgaccggcgcggcctgcgctaccctggtggcagagatggctgaacgccacaaaggc
ccggtggtgctggtggcacctgacatgcaaaacgcgctgcgtctgaacgacgagatcagg
cagttcaccgacagcatggtgatggggctggctgactgggaaacgctcccctacgacagc
ttctcgccgcaccaggatatcatctcctcccgtcttgccaccctttaccagttacccacc
atgcagcgcggcgtactgatcgtcccggtcagcaccctgatgcagcgcgtctgtccgcac
agcttccttcacgggcacgcgctggtgatgaaaaagggccagcgcctgtcgcgcgatgcg
ctgcgcgatcagctggagggtgccggctaccgccatgtcgatcaggtgatggagcacggc
gaatatgccacccgcggcgcgctgctcgacctgttcccgatgggcagcgatcagccctac
cgcctcgatttctttgacgatgaaatcgacagcctgcgcctgttcgacgtcgacagccag
cgcacgctggaggaagtggcggccattaacctgctgccggcgcacgagtttcccaccgac
cagaccgccatcgagctgttccgcagccagtggcgcgaccgttttgaggtgaagcgcgat
gccgagcatatctatcagcaggtcagtaaagggacactgcctgccggtatcgaatactgg
cagccgctgttcttcagcgagccgctgccgccgttatttagctatttcccggccagcacc
ctgatcgtcaacaccggcgatctcgaggccagcgcggaacgtttccagaatgaagcccgc
gcccgcttcgaaaaccgcggcgtcgatccgatgcgcccgctcctgtcgccggaactgctg
tggctgcgcagcgatgagctgttcggcgaactgaaaaaatggccgcgcgtacagctgaaa
accgagcgcctggcggacaaagcggcgaataccaatctgggctaccagacgctgccggac
ctcgcggtgcaggcgcaaaacaaagcgccgctggataatctgcgccgcttcctcgagtcc
tttaccggcccggtgatcttctccgtggaaagcgagggtcgccgtgaagcgctgagcgaa
atgctggcgcggattaaaattgcgccaaaacacgtgctgcgtctggaagaagccaccggc
aatggccgctatctgatgattggcgccgccgaacacgggtttattgacagtcagcgcggc
ctggcgctgatttgcgaaagcgacctgctcggcgagcgtgtggcgcgccgccggcaggat
tcacgccgcaccatcaaccctgacatcctcattcgcaaccttgccgaactgcatatcggc
cagccggttgtccatctggagcacggcgtgggccgctatgcgggaatgaccaccctggaa
gccggcggcatcaccggcgaatacctgatgctgacttacgccaacgatgccaggctatac
gttccggtatcctccctgcatcttatcagccgttacgccggcggggcggaagagaacgcg
cccctgcacaagctgggcggcgatgcctggacccgggcgcgacaaaaagcggctgagaaa
gtacgcgacgtggcggcagagctgctggatatctacgcccagcgcgcagcgaaggcgggc
tttgcctttaaacacgaccgcgaacagtatcagctgttctgcgacggcttcccgtttgaa
accacgccggatcaggcgcaggcgattaacgccgtcctcagcgatatgtgccagccgctg
gccatggaccgcctggtgtgcggcgatgtgggcttcggtaagaccgaagtggctatgcgc
gccgccttcctcgccgtggagaaccacaagcaggtggcggtgctggtgccgaccaccctg
ctggctcagcaacactatgacaacttccgcgatcgtttcgccaactggccggtacgcatc
gaaatgctctcccgcttccgcagcgctaaagagcaggcgcagatcctcgagcaggccgcg
gaaggcaaaatcgatatcttaatcggcacccataagctgttgcagagcgaggtgaagctg
cgcgatctggggctgctgatcgtcgacgaagagcaccgctttggcgttcgtcacaaagaa
cgcatcaaagcaatgcgcgccgatgtcgatatcctgaccctcaccgccacgccgatcccg
cggacgctgaacatggcgatgagcgggatgcgggacctgtcgatcatcgccacgccgccg
gcgcgccgtctggcggtgaagaccttcgttcgcgaatacgacgccctggtggtgcgcgag
gcgatcctgcgcgaaacgctgcgcggaggccaggtctactatctgtttaatgacgtcgaa
aacatccagaaagccgccgacaagctggcggagctggtgccggaggcgcggatagccatc
ggccacggccagatgcgggagcgcgaactggagcgggtgatgaatgacttccatcaccag
cgcttcaatgtgctggtgtgcaccaccatcatcgaaaccgggatcgacattcccaccgcc
aacaccatcatcatcgaacgcgccgaccattttggcctcgcccagctgcaccagctgcgc
ggccgcgttggccgttcgcatcatcaggcctatgcctggctgctgacgccgcatccgaaa
gcgatgaccaccgatgcgcaaaagcgccttgaagccattgcgtcgctggaagatctcggc
gccggctttgcgctggcgacccacgatctggagattcgcggggccggggaactgctcggc
gaagatcagagcggtcagatggaaaccatcggtttctctctgtatatggagctgctggag
aacgcagtcgatgcgctgaaagccggacgcgaaccctcgctggaagatctcaccagccag
cagacggaggtcgaactgcgcatgccttccctgctgcctgacgatttcatccctgacgtc
aatacgcgactgtcattctataagcgcattgccagcgccaaaaacgaactcgatctggag
gagatcaaagtcgagctgatcgatcgttttggccgcctgcccgatgccgcccgcaacctg
ctggatattgcccgtctgcgtcagcaggcgcagaaactggggatccgcaaactggaaagc
aacgaaaaaggcggcgtgattgaatttaacgagaaaaacaacgtcaatccggtgtggttg
atcggcctgctgcagaagcagccccagcacttccggctggacgggccgacgcgcctgaaa
ttcatgcaggatctggaagagcgtaaaacgcggatggactgggttcgccagtttatgcgt
cagttggaagagaacgccgtcgcctga
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