Kocuria varians: CIB50_0000087
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Entry
CIB50_0000087 CDS
T06882
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kvr
Kocuria varians
Pathway
kvr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIB50_0000087 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kvr03021
]
CIB50_0000087 (rpoC)
03400 DNA repair and recombination proteins [BR:
kvr03400
]
CIB50_0000087 (rpoC)
Enzymes [BR:
kvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIB50_0000087 (rpoC)
Transcription machinery [BR:
kvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CIB50_0000087 (rpoC)
DNA repair and recombination proteins [BR:
kvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CIB50_0000087 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
NOG1_N
DUF4407
Motif
Other DBs
NCBI-ProteinID:
QMS55407
UniProt:
A0A7D7KY09
LinkDB
All DBs
Position
complement(86065..89955)
Genome browser
AA seq
1296 aa
AA seq
DB search
MSNDSSLGLMQIGLATADQIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRYKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEQARHDDLPNLQAAIDREKKQLEDTRDADINAIARDLEND
LARVEEEGGKAAEKRKLRDSADRQMANVRKRADREIDYLEKVWDRFKNLKVNDLEGDEAL
YRQMVDRYGMYFEGSMGAESIKKRLESFDLEAEAESLRETIATGKGQRKTRALKRLKVVN
AFLTTDNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARVLMLSSNNILKPSDGKPIALPSQDMIIGLYHLTTVREGWAGEGN
SYSSVAEAIMANDSGELHLNAKCKIELEDFVPYAGWEAPEGWEPGQPAVVETTLGRVLFN
ETLPEDYPWDENVADKKHLSALVNDLAERYPMTRVAKTLDNLKDAGFHWASRSGVTVAIS
DIATPPEKPAIMEGYEAQAARIQGQYDKGLIDDDERRSELIDIWSKATDEVAQAMRDNLT
PTNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIMPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVRESDCQTVRGLVLPLADVTDTGVRTLHE
DIENTVHGRVLASAVADENGEVLAEAGADMSDAMISTLYNAGVDEVRVRSVLTCESAVGV
CAACYGRSLATNQLVDIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVASSDGDITQGLPRI
QELFEARTPKGVAPISEVAGRIRIEDTDKSLKIVVVPDNGDEEFAYPVLRRAKLLVADGD
HVDVGQQLVTGAVDPKEVLRIRGPREAQKHLVDEVQGVYRSQGVGIHDKHVEVIVRQMLR
RVTIIESGDTALLPGELVDNVRFLEANRGAVAESKRPAAGRPELMGITKASLATDSWLSA
ASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLERYNSVDVEPTEEARASMF
TDPSAFSDFSYAEENSGGLGSEFQAIPLDDYDFGGN
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgattcttcactgggtctcatgcagatcggcctggccaccgcggatcagatc
cgcggctggtcctatggcgaggtcaagaagccggaaaccatcaactaccgcacgctcaag
cccgagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgctacaagggcatcatctgtgaacgctgcggcgtg
gaggtcactcgcgccaaggtgcgccgtgagcgcatgggccacatcgagctcgccgctccc
gtgacccacatctggtacttcaagggcgtcccctcgcgtttgggctacctgctggacctc
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcacctccgtggac
gagcaggcccgccacgacgacctgcccaacctgcaggccgcgatcgaccgtgagaagaag
cagctggaggacacccgggacgcggacatcaacgcgatcgcccgcgacctcgagaacgat
ctcgcgcgcgtcgaggaggagggcggcaaggctgccgagaagcgcaagctgcgcgactcg
gcggaccgccagatggccaacgtgcgcaagcgcgcggaccgcgagatcgactacctggag
aaggtctgggaccgcttcaagaacctcaaggtcaacgacctcgagggtgacgaggccctg
taccgccagatggtggaccgctacggcatgtacttcgagggctccatgggcgccgagtcc
atcaagaagcgcctcgagagcttcgacctcgaggccgaggccgagtcgctgcgcgagacc
atcgccacgggcaagggccagcgcaagacccgcgccctgaagcgcctgaaggtggtcaac
gctttcctgaccacggacaactcgccgctgggcatggtcctggacgccgtgccggtgatc
ccgccggagctgcgtcccatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgcctcaagcggctgctggacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtggactcc
ctgttcgacaacggccgccgcggccgccctgtcacgggtcccggcaaccgtgcgctgaag
tcgttgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctcggcaag
cgcgtggactactccggtcgttccgtgatcgtggtgggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggccctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtccgccaagcgcatggtcgagcgctaccgt
ccccaggtgtgggacgtgctggaagaggtcatcaccgagcacccggtgctgctcaaccgc
gcccccaccctgcaccgtctgggcatccaggcgttcgagccgcagctcgtggagggcaag
gccatccagctgcacccgctcgtgtgcggcgcgttcaacgctgacttcgacggcgaccag
atggccgtccacctgccgctctccccggaggcgcaggcggaggcccgcgtgctgatgctg
tcctcgaacaacatcctcaagccgtcggacggcaagccgatcgccctgccgtcgcaggac
atgatcatcggtctgtaccacctcaccaccgtgcgtgagggctgggccggggagggcaac
agctactcctcggtggccgaggcgatcatggccaacgactccggcgagctgcacctgaac
gccaagtgcaagatcgagcttgaggacttcgtgccgtacgccggctgggaggctcccgag
ggctgggagccgggtcagcccgccgtcgtcgagaccacgctcggccgtgtgctcttcaac
gagacgctgcccgaggactacccctgggacgagaacgtcgcggacaagaagcacctctcc
gcgctcgtgaacgacctcgcggagcgctacccgatgacacgcgtggccaagacgctggac
aacctcaaggacgccggcttccactgggcctcgcgctccggggtcaccgtggcgatctcg
gacatcgcgacgccgccggagaagcccgccatcatggagggctacgaggcacaggccgcg
cgcatccagggccagtacgacaagggcctgatcgacgacgacgagcgtcgatcggagctc
atcgacatctggtccaaggccacggacgaggtcgcgcaggccatgcgggacaacctcacg
cccaccaacaccatcaaccgcatggtgtcctccggtgcgcgaggcaactggatgcaggtc
cgtcagattgccggcatccgcggtctcgtggcgaacccgaagggtgagatcatgccccgc
ccgatcaagtcctcctaccgggagggtctgtcggtgctggagtacttcatcgccacccac
ggtgcccgcaagggtctcgcggacacggcgctgcgtaccgccaactcgggctacctgacc
cggcgtctggtggacgtgtcgcaggacgtgatcgtgcgcgagtcggactgccagaccgtt
cgaggcctggtcctgccgctcgcggacgtgacggacaccggtgtgcgcaccctgcacgag
gacatcgagaacacggtgcacggccgcgtgctcgcctcggctgtggcggacgagaacggc
gaggtgctggccgaggctggtgccgacatgtcggacgccatgatcagcaccctgtacaac
gcgggtgtggacgaggtgcgcgtgcgctccgtgctcacgtgcgagtccgcggtgggcgtg
tgcgccgcgtgctacggccgctcgctggccaccaaccagctggtggacatcggcgaggcc
gtgggcatcgttgccgcgcagtccattggcgagcccggcacccagctgacgatgcgcacc
ttccacaccggtggtgtggcgtcctcggacggtgacatcacgcagggtctgccccgtatc
caggagctcttcgaggcccgcaccccgaagggtgtggccccgatctccgaggtggccggc
cggatccgcatcgaggacacggacaagtccctgaagatcgtcgtggtaccggacaacggt
gacgaggagttcgcctacccggtgctgcgtcgtgccaagctgctcgtggcggacggcgac
cacgtcgacgtcggccagcagctcgtgaccggcgcggtggatccgaaggaggtgctgcgc
atccgcggtccccgcgaggcgcagaagcacctggtggacgaggtccagggcgtataccgc
tcgcagggcgtgggcatccacgacaagcacgtggaggtcatcgtgcggcagatgctgcgt
cgcgtgaccatcatcgagtccggcgacactgcgctgctgccgggtgagctggtggacaac
gtgcgcttcctcgaggccaaccgcggtgcggtggccgagagcaagcgtcccgccgccggg
cgtccggagctcatgggcatcaccaaggcctcgctcgccacggactcgtggctgtccgcc
gcgtccttccaggagaccacgcgtgtgctcacgcaggccgccatggagggcaagtcggac
ccgctgctgggtctgaaggagaacgtgatcatcggcaagctgatccccgccggtaccggt
ctcgagcggtacaacagcgtggacgtggagcccacggaggaggccagggcctcgatgttc
acggatccgtccgcgttctcggacttcagctacgcggaggagaactccggcgggctgggt
tccgagttccaggcgatccccctggacgactacgacttcggcggcaactga
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