Kocuria varians: CIB50_0000131
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Entry
CIB50_0000131 CDS
T06882
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kvr
Kocuria varians
Pathway
kvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIB50_0000131 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvr03019
]
CIB50_0000131 (deaD)
03009 Ribosome biogenesis [BR:
kvr03009
]
CIB50_0000131 (deaD)
Enzymes [BR:
kvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIB50_0000131 (deaD)
Messenger RNA biogenesis [BR:
kvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIB50_0000131 (deaD)
Ribosome biogenesis [BR:
kvr03009
]
Prokaryotic type
rRNA helicases
CIB50_0000131 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
UvrA_inter
Cas3-like_C_2
GET4
Motif
Other DBs
NCBI-ProteinID:
QMS55448
UniProt:
A0A7D7L0W6
LinkDB
All DBs
Position
complement(132105..134390)
Genome browser
AA seq
761 aa
AA seq
DB search
MPTESTPEDHTNAHTVAPASEPGETRIVTEDDAAAVADAAPATEPGDVADAAEQAPAVTD
APVNHDVETREVKTQDVETRDAKSQDAKTQDAKTQCEPEKDAQAPAKDSSDEPQLPTFAE
LGVDGRVLAALDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSKLAE
LSDLHGPQRSTRVLVLAPTRELALQVAEAFGSYATHLDDFTVLPVYGGSSYGPQLAGLKR
GAQVVVGTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPTEKQVA
LFSATMPKAIRRIAQQYLRDPQEITVKAKTTTGTNTRQRYMQVMGPHKLDAMTRVLEVED
YDGVIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDILVATDV
AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIEKAT
RQPVEQMRVPSTDEVNQTRKDNFAQQIEETIESEDLTLFRELVERYESEHDVDAVEIAAA
LAVIAQNGRPFLVQDLPEVPQRKRDRDRDRQDGGGPRNRRAPGEEAGMRTYKLAVGHRDR
VVPGSVVGALTHEGGLNGSQIGAIDIRPTFTLVGLPENLPAGTLDKLSNTQINGAPIRIQ
EDRGPGGARSGGGGNRFRGGDRDRAPRNDRGGYRGDRGGSRDDRGDRGGYRDDRGDRGGY
REDRGGYRDDRGGRPRGGGSSYQDRPRKKSYGKNNGGYSGR
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
gtgcccactgaatccacccccgaagaccacacgaacgcccacaccgtggcccccgcgagc
gagccgggcgagacccggatcgtgaccgaggacgacgccgccgccgttgcggacgccgcg
ccggccaccgagccgggcgacgtcgccgacgctgcagagcaggcacccgcggtcaccgac
gcccccgtgaaccacgacgtcgagacccgcgaggtcaagacccaggacgtcgagacccgg
gacgcgaagagccaggacgcaaagacccaggacgcaaagacccagtgcgagccggagaag
gacgcccaggcacccgccaaggactcctccgacgagccccagctgcccaccttcgccgag
ctcggcgtggacgggcgcgtgctggcagccctcgacgaggtcggctacgagtacccctca
cccatccaggcggccacgatccccgcgctgctcagcggccgcgacgtcgtcggcctcgcc
cagacgggcaccggcaagaccgccgcgttcgcggtcccggcgctgtccaagctcgcggag
ctctcggacctgcacggcccgcagcgcagcacccgcgtgctcgtgctggcccccacccgt
gagctcgcgctgcaggtcgcggaggccttcggctcctacgccacccacctggacgacttc
accgtgctgcccgtctacggcggctcctcctacggaccccagctggccgggctcaagcgc
ggcgcgcaggtggtcgtgggcacgcccgggcgcgtgatcgaccacctctccaagggttcc
ctgaagctcgacgacatcgcctacgtggtgctggacgaggcggacgagatgctgcgcatg
ggcttctccgaggacgtcgagaagatcctcgcgcagacccccaccgagaagcaggtggcg
ctgttctccgccaccatgcccaaggcgatccgccgcatcgcgcagcagtacctgcgcgac
ccgcaggagatcaccgtcaaggcgaagaccaccacgggcaccaacacccgccagcgctac
atgcaggtcatgggcccccacaagctggacgccatgacccgtgtgctggaggtcgaggac
tacgacggcgtgatcgtcttcgtgcgcaccaaggccgccaccgaggagatcgcggacaag
ctcaaggcccgcggctacaccgccgccgcgatcaacggcgacatcccccagaacctgcgc
gagcgcacggtggattccctgcgcgagggcaagatcgacatcctcgtcgccacggacgtg
gccgcccggggtctggacgtggagcggatctccctggtggtcaactacgacatcccccac
gacaccgagtcctacgtgcaccgcatcggccgcacgggccgcgccggtcgcaagggcgag
gcgatcctgttcatgacgccgcgcgagaagtacctgctgcgcgccatcgagaaggccacc
cgccagccggtcgagcagatgcgcgtgccgtccacggacgaggtcaaccagacccgcaag
gacaacttcgcgcagcagatcgaggagaccatcgagtccgaggacctcacgctgttccgc
gagctggtggagcgctacgagtccgagcacgacgtcgacgcggtggagatcgcggccgca
ctcgccgtgatcgcgcagaacggccgtccgttcctcgtgcaggacctgccggaggtgccc
cagcgcaagcgcgaccgggaccgtgaccgtcaggacggtggcgggccccgcaaccgccgc
gccccgggcgaggaggccggcatgcgcacgtacaagctcgccgtgggccaccgcgaccgc
gtggtgcccggctccgtggtgggtgcgctcacgcacgagggtgggctgaacggctcgcag
atcggcgcgatcgacatccgccccacgttcaccctcgtgggcctgccggagaacctgccg
gcgggcacgctggacaagctctccaacacccagatcaacggtgcacccatccgcatccag
gaggaccgcggaccgggtggcgcccgcagcggcggcggtggcaaccgcttccgcggcggc
gaccgtgaccgggcaccccgcaacgaccgcgggggctaccgcggtgaccgtggcggctcc
cgggacgaccgcggcgaccgcggtgggtaccgggacgaccgtggtgaccgagggggctac
cgcgaggaccgcggtggctaccgtgacgaccgcggcggtcgcccgcgcggcggcggctcc
tcctaccaggaccgtccccgcaagaagagctacggcaagaacaacggtggctactccggc
cgctga
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