Kocuria varians: CIB50_0000412
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Entry
CIB50_0000412 CDS
T06882
Symbol
dnaX_1
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
kvr
Kocuria varians
Pathway
kvr03030
DNA replication
kvr03430
Mismatch repair
kvr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CIB50_0000412 (dnaX_1)
03430 Mismatch repair
CIB50_0000412 (dnaX_1)
03440 Homologous recombination
CIB50_0000412 (dnaX_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kvr03032
]
CIB50_0000412 (dnaX_1)
03400 DNA repair and recombination proteins [BR:
kvr03400
]
CIB50_0000412 (dnaX_1)
Enzymes [BR:
kvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CIB50_0000412 (dnaX_1)
DNA replication proteins [BR:
kvr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CIB50_0000412 (dnaX_1)
DNA repair and recombination proteins [BR:
kvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CIB50_0000412 (dnaX_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
AAA
DNAX_ATPase_lid
AAA_22
RuvB_N
AAA_30
Rad17
AAA_14
AAA_19
AAA_18
Mg_chelatase
AAA_5
zf-CXXC
AAA_16
AAA_28
nSTAND3
ORC-CDC6-like
AAA_2
Motif
Other DBs
NCBI-ProteinID:
QMS55720
UniProt:
A0A7D7Q4D6
LinkDB
All DBs
Position
453832..457515
Genome browser
AA seq
1227 aa
AA seq
DB search
MSETPAKVSYVTTALYRRYRPETFEDVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGK
TTSARILARCLNCAEGPTATPCGHCESCRDLARDGAGSLDVIEMDAASHGGVDHARDLRE
RATFAPVRDRYKIFIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPSKVLTTIRSR
THHYPFRLVPPEPLMTYLEQLCREEGVATEPGVLSLVVRAGGGSVRDSLSVLDQLMAGSD
ENGITYDLAVALLGYTHAALLDDVVDAFAAGDAATVFSSVDRVIQTGQDPRRFVEDLLER
FRDLVVVNAVPDSADNILHGMPTDQINRLRNQSTQLGAAELSRSADIINEALNEMTGATS
PQLHLELLCARILLPAADHTTRGITSRVDRLERRLSIPRGAGIRQGTGDTATSSAGTAAP
EPVAPEPVAPEPATPEPTAPAPQATAGHETSPVVEQPRGGEQDGPSLPVAPDGSTPAGAD
ANGSAEGRPTEQTPDVREPTDPQDESEETEGSAHPAAGEPVPEQARGPQAQHPPADGTVD
DSQQSSLAGSRMQEGTSRPAQQPAPAAQSRPGSGPDAAHSRADAPAAPSSGIPASATATS
STSASGGTSTDSVSERTASREAAPQPPQVPEEQSAPSDVTSGELELLRSSWPEIVSALAE
IRRVAWAITVRGTPISYENGTLRIAFEGDGDILNFPRFEADVRNAIQTVVGLDCAVEAVR
PGDTQGRSRGQEPGGPGPRPTNGPRGTNGPPNRPNGSNGSDGSNGQGASSAQGPSRGRRP
TGGAPADGRSRDQPDYFRDPEGFGVNRHRGPQNRDPAPSRTATAPAEDDDEPVTSWSVAA
IPQPGSTTKPDTGPGTTSNAAEVAHAADAAAASAPQGGEDSTSEHPRREHGEPERIAAST
PDAVGSEPPAHADPAGPSAEAAQSEAPGSPAGESAAEDSAEAVTVDPGLAAPGTSVPGPA
SSAQSSSQSEPSHRSGGWSHPGGSAASGASPQTGQPGDSSPSGSPHQSSPQSSRGTDRHA
DRGPEYWSPDEPPPPPEDEPPADMYDAPLSRTRPVPRRDTPAPDRVTEPGPGAHAPAAAD
ARSGPRGGAGTAPRPDGGSAPGDGNGSPGATGSGHGTGPGTGTGTGNSNHGGDTASAGSQ
GRQPGSRPSWRERHADAIAAARATTPGTADQNGGQRGDGTGSSADDENFVPGADDESLED
SSLYGRAAIERILGGMLIDERAHDANQ
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgagacccccgctaaggtttcctacgtgactaccgccctgtaccgccgctaccgc
ccggagaccttcgaggacgtcatcggtcaggagcacgtgaccgagcccctgatgacggct
ctgcgcaagaacagggtgaaccacgcctacctcttctccggcccgcgcggctgcggcaag
accacctctgcccgcatcctcgcgcgctgcctgaactgcgcggagggtcccaccgccacg
ccgtgcggccactgcgagtcctgccgggacctcgcccgggacggtgccggctccctggac
gtcatcgagatggacgccgcctctcatggcggcgtggaccacgcccgtgacctgcgcgag
cgcgccaccttcgcccccgtccgggaccgctacaagatcttcatcatcgacgaggcccac
atggtcacgcgcgagggcttcaacgcgctcctgaagatcgtggaggagccgccggagcac
gtgaagttcatcttcgccaccacggaaccctccaaggtcctcaccaccatccgctcccgc
acgcaccactacccgttccgactggtgcccccggagccgctcatgacgtacctggagcag
ctgtgccgggaggagggcgtggccaccgagcccggcgtgctctccctcgtggtccgcgcc
ggcggcggctccgtgcgcgactcgctctccgtgctggaccagctcatggccggctcggac
gagaacggcatcacctacgacctcgccgtcgccctgctgggctacacgcacgccgccctg
ctcgacgacgtcgtggacgccttcgccgccggagacgccgccacggtcttctcctcggtg
gaccgggtgatccagacgggccaggacccccgccgcttcgtggaggacctgctggaacgc
ttccgggaccttgtggtggtcaacgcggtgccggactccgcggacaacatcctgcacggc
atgcccacggaccagatcaaccggctgcgcaaccagagcacccagctgggcgcggcggag
ctgtcccgctccgcggacatcatcaacgaggcgctcaacgagatgacgggtgccacctcc
ccgcagctgcacctggagctgctgtgcgctcggatcctgctgcccgccgcggaccacacc
acgcgcggcatcacctcccgcgtggaccggctggagcgtcggctgagcatcccgcgcggg
gccgggatccggcagggaacgggggacaccgcgacgtcgtccgccggaaccgcggcaccc
gaacctgtagcgcccgaacctgtagcgcccgaacccgcaacgccggaacccactgcgccc
gccccccaggcgacggcgggccacgagacttctccggtcgtcgagcagccgcgcggtggc
gagcaggacggtccctcgctgcccgtggccccggacggctccaccccggccggtgcggac
gcgaacggctcggccgagggtcggcccaccgagcagaccccggacgtccgggagcccacc
gacccgcaggacgagtccgaggagacggagggaagcgcccaccccgcggccggtgagccc
gtgccggagcaggcccgcggaccccaggcgcagcatcccccggccgacggcaccgtcgac
gattcacagcagtcctcgctcgccggttcccggatgcaggaggggacctcccgtcccgcc
cagcagcccgcgcccgcagcacagtcgcgcccgggttccgggcccgacgccgcccactcc
cgggccgacgcacccgccgccccctcgtccggcatccccgcgtccgccacggccacctcc
agcacgtcggcatccggtggcacctcgacggacagcgtctccgagcgcaccgcgtcccgg
gaggccgccccgcagccgccgcaggttccggaggagcagagcgccccgagcgacgtcacc
agcggcgagctcgagctgctgcgctcctcgtggcccgagatcgtctccgccctggcggag
atccgtcgtgtcgcctgggccatcaccgtgcgcggcacccccatctcgtacgagaacggc
acactgcggatcgcgttcgagggcgacggcgacatcctcaacttcccccgcttcgaggcg
gacgtccgtaacgccatccagaccgtcgtgggcctggactgcgccgtggaggccgtgcgc
cccggggacacccagggccgttcccggggacaggaacccggcggcccgggcccccgtccg
accaacgggccccgtgggacgaacgggccgccaaaccggccgaacgggtccaacgggtcc
gacgggtccaacgggcagggtgcgtccagcgcacaggggccctcgcgcggccgccgcccg
acaggaggggcacccgccgacggacgctcccgcgatcagcccgactacttccgcgacccc
gagggcttcggggtcaaccgccaccgcggcccgcagaaccgggaccccgccccgtcgcgg
accgccaccgctcccgccgaggacgatgacgagcccgtcacgtcctggtccgttgccgcc
atcccgcagccgggttccaccacgaagccggacacaggcccgggcaccacctccaatgcg
gccgaggtggcccacgccgctgacgccgccgctgcgtccgcaccccaggggggcgaagat
tccacgtcggagcacccccggcgggagcacggtgagcccgagcggattgcggccagcacg
cccgacgccgtcggttcagaaccgcccgcccacgcggatcccgcaggtccctcagcggag
gccgcgcagtcggaggcaccgggttcccctgccggggagtctgctgcggaggactctgcg
gaggcggtgaccgtggatcccgggctggcggcaccggggacatccgtgcctggtccagcg
tcgtcggcccagtcgtcatcccagtccgaaccctcgcatcggtccggaggatggtctcac
cccgggggctctgccgcatccggggcctcgccccagaccggtcagcccggagattcgtcc
ccgtccgggtccccgcaccagtcctcacctcagtcatcgcgagggacagatcgtcacgcg
gaccgcgggcccgagtactggagcccggacgaacccccgcctcccccggaggacgagccg
cccgcggacatgtacgacgccccgctgagccggacgcgaccggttccacgccgggacacc
ccggcaccggatcgggtcacggaaccggggcccggagcacacgcaccggcggccgccgat
gcccgcagtggccctcgcggcggcgctggcaccgctccccgccccgacgggggcagtgct
cccggcgacggcaacggcagtcccggtgccaccggcagcggacacggcaccggccctggc
actggcactggcactggcaacagcaaccacggtggcgataccgcatccgcgggctcgcag
ggcaggcaaccggggagccgtcccagctggcgcgaacgccacgccgacgcgatcgctgcc
gcgcgtgccaccacccccggaaccgcagaccagaacggcgggcagcgcggtgacggcacg
gggtcgagcgctgacgacgagaacttcgttcccggcgcggacgacgagtccctcgaggac
tcgtccctgtatggtcgggcagcgatcgagcggatcctgggtggcatgctgatcgacgaa
cgagcacacgacgcgaaccagtga
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