Kocuria varians: CIB50_0000719
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Entry
CIB50_0000719 CDS
T06882
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kvr
Kocuria varians
Pathway
kvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIB50_0000719 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvr03019
]
CIB50_0000719 (recQ_1)
03400 DNA repair and recombination proteins [BR:
kvr03400
]
CIB50_0000719 (recQ_1)
Enzymes [BR:
kvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIB50_0000719 (recQ_1)
Messenger RNA biogenesis [BR:
kvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIB50_0000719 (recQ_1)
DNA repair and recombination proteins [BR:
kvr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CIB50_0000719 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Peripla_BP_4
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
QMS56019
UniProt:
A0A7D7PZX3
LinkDB
All DBs
Position
798172..800022
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AA seq
616 aa
AA seq
DB search
MTSTATATTSLGVLQEVFGYDAFRGEQAEIIEQVVGGGDAVVLMPTGGGKSLCYQIPALL
REGTGVVVSPLIALMSDQVAALEAVGIRAAYLNSTLEPYEAQEVERQLLAGDIDLLYMAP
ERLILPRTVELLQRSRIALFAIDEAHCVAQWGHDFRPDYLGLSVLADAFPDVPRIALTAT
ATRETHKEITERLRMEDARHFVSNFDRPNIQYRIESKDRAKDQLLRLIQSEHPGEAGIVY
CMSRKSVESTAAWLSARGVDAKPYHAGLDAAVRQDTQVRFLREEGIVVVATIAFGMGIDK
PDVRFVAHLDLPKSIEGYYQETGRAGRDGMPATAWMAYGLGDVVNQRRMIDQGDGSDLHK
RNARSHLDAMLALCETTDCRRVQLLRYFGQDSEPCGNCDTCLNPPKVWDATVPAQKLLST
LIRLQRERGEQFGSGKVFDILLGRNNERTETSRHQELSVWGIGQDLSEREWRSVLRQLLA
HRVVEAVGDFGVLVPGPEAGPVLRGEGTLELAVDRAPTARANGRARSGGGSGRSRAADTL
DEAAKETFEALREWRTSVAKEKQIPPYMVFSDATLVGIVEAAPASTAQLSGISGVGAKKL
AEYGDAVLEVLRSPGS
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgacttccaccgccactgccaccacatccctgggcgtcctgcaggaggtcttcgggtac
gacgccttccgcggtgagcaggcggagatcatcgagcaggtggtgggtggcggggacgcc
gtggtcctcatgcctacgggcggcggcaagtccctgtgctaccagatccccgcgctgctg
cgggagggcacgggcgtggtggtctccccgctgatcgcgctgatgtccgaccaggtggcc
gcgctcgaggccgtgggcatccgcgccgcgtacctcaactccaccctggagccctacgag
gcgcaggaggtggagcggcagcttctcgccggggacatcgacctgctctacatggcgccc
gagcggctgatcctgccgcgcaccgtggagctgctgcagcgctcgcggatcgccctgttt
gcgatcgacgaggcgcactgcgtggcccagtggggtcacgacttccgtccggactacctc
ggactctccgtcctggcggacgcgttcccggatgtcccccggatcgcgctgaccgcaacg
gccacgcgggagacccacaaggagatcaccgagcggctgcggatggaggacgcccgccac
ttcgtctccaacttcgaccgccccaacatccagtaccgcatcgagtccaaggaccgcgcg
aaggaccagctgctgcggctcatccagtcggagcacccgggggaggcaggcatcgtctac
tgcatgtcccgcaagagcgtggagtccaccgccgcgtggctcagcgcccgcggggtcgac
gccaagccctaccacgcgggtctcgacgccgcggtgcgccaggacacgcaggtgcggttc
ctgcgggaggagggaatcgtcgtcgtcgccacgatcgcgttcggcatgggcatcgacaag
ccggacgtccgcttcgtcgcccacctggacctgcccaagagcatcgaggggtactaccag
gagacaggccgcgccggccgcgatggtatgcccgcaacggcatggatggcgtacggcttg
ggcgacgtggtcaaccagcggcgcatgatcgaccagggagacggatctgacctgcacaaa
cgcaatgcgcgctcgcacctggacgccatgctcgccctgtgcgagaccacggactgccgt
cgtgtgcagctgctgcggtacttcggccaggactccgagccgtgcggcaactgcgacacg
tgcctgaacccgcccaaggtctgggacgccaccgtgccagcccagaagctgctgtccacg
ctcatcaggctgcaacgcgaacgcggtgagcagttcggctccggcaaggtcttcgacatc
ctgctgggtcgcaacaacgagcgcacggagacgtcgcgccaccaggagctgagcgtgtgg
gggatcgggcaggacctctccgagcgggagtggcgctcggtgctgcggcagctgcttgcc
caccgggtcgtggaggccgtcggtgatttcggcgtgctcgttcccggcccggaggccgga
cccgtgctgcgcggtgagggcactctggagctggcggtggacagggcgccgacggcgcgc
gcgaacggacgcgcccgcagcggcgggggcagcgggcgctcacgggccgcagacaccctg
gacgaggccgcgaaggagaccttcgaggcgctgcgggagtggcggacatcggtggccaag
gagaagcagatcccgccctacatggtgttctcggacgccacgctcgtcggcatcgtggag
gccgcccccgcctcgaccgcgcagctcagcggcatcagcggagtgggcgccaagaagctc
gccgagtacggggacgccgtgctggaggtgctgcgctccccggggtcctga
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