Kocuria varians: CIB50_0001495
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Entry
CIB50_0001495 CDS
T06882
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
kvr
Kocuria varians
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kvr03016
]
CIB50_0001495 (truB)
Enzymes [BR:
kvr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
CIB50_0001495 (truB)
Transfer RNA biogenesis [BR:
kvr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CIB50_0001495 (truB)
Prokaryotic type
CIB50_0001495 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
DKCLD
DUF5122
Motif
Other DBs
NCBI-ProteinID:
QMS56776
UniProt:
A0A7D7PZ74
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All DBs
Position
1693065..1694114
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AA seq
349 aa
AA seq
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MTAREDVPSPAPSLPRVAGLVVVDKPLGWTSHDVVSRMRRLAGTRKVGHAGTLDPAASGV
LVLGVEKATKLLTYVTGADKTYETTIRLGAATVTDDAEGDIVRQAPPERLEALTEEQIRA
AVGELTGEIQQVPSSVSAIKVNGERSYARVRKGEDVELAARPVTVREFTVHTVTRPEDTA
AVDVTATVTCTSGTYIRALARDLGEALGVGGHLTALRRTRVGSFTLEQAHTVEELAEQVR
AGDTVSTLPLDDAARGLFPVRELSAAQATDLSHGRRIAAAGETLAGSGDSGDGVVACFAP
DGTLVALAEERGRGEKRYATSVLGIAAGVTFTDPAEASTGNESGAEGES
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
gtgacagcgcgagaagacgtcccgagcccggccccctctctcccgagggtcgccgggctc
gtcgtcgtggacaagccgctcggctggacctcccacgacgtggtctcacggatgcgccgc
ctggcgggcacgcggaaggtgggccacgcgggcacgctggaccccgccgcgtcgggcgtg
ctcgtgctcggggtggagaaggccaccaagctgctgacctacgtcacgggcgcggacaag
acctacgagaccaccatccgcctgggggcggctacggtcaccgacgacgccgagggcgac
atcgtgcgccaggccccgcccgagcggctcgaggccctcacggaggagcagatccgcgct
gcggtgggggagctgaccggtgagatccagcaggtcccctcgtcggtgagcgccatcaag
gtcaacggcgagcgctcctacgcccgggtccgcaagggcgaggacgtggagctcgcggcc
cggcccgtcaccgtgcgggagttcacggtgcacaccgtcacccggccggaggacaccgcg
gcggtggacgtcacggccaccgtgacctgcacctccggaacgtacatccgtgccctggcc
cgggacctgggcgaggcgctcggggtgggcgggcacctcacggcgctgcgccgcacgcgc
gtgggatccttcacgctcgagcaggcccacaccgtcgaggagctcgccgagcaggtccgc
gccggggacacggtgagcaccctgcccctggacgacgccgcccgcggcctcttccccgtg
cgcgagctgagcgcggcacaggccaccgacctctcgcacgggcgcaggatcgccgccgcg
ggggagaccctggccggctccggggactcgggcgacggcgtcgtcgcctgcttcgcgccg
gacggcaccctggtggcgctggccgaggagcggggtcgaggcgagaagcgctacgcgacg
tcggtgctcggcatcgccgcgggcgtgaccttcacggatcccgccgaggcctccaccggc
aacgagtccggcgcggagggggagtcctga
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