Kocuria varians: CIB50_0001503
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Entry
CIB50_0001503 CDS
T06882
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
kvr
Kocuria varians
Pathway
kvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIB50_0001503 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvr03019
]
CIB50_0001503 (pnp)
03016 Transfer RNA biogenesis [BR:
kvr03016
]
CIB50_0001503 (pnp)
Enzymes [BR:
kvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CIB50_0001503 (pnp)
Messenger RNA biogenesis [BR:
kvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CIB50_0001503 (pnp)
Transfer RNA biogenesis [BR:
kvr03016
]
Prokaryotic type
tRNA degradation factors
CIB50_0001503 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_2
KH_PNO1_2nd
S1_RRP5
RNase_PH_C
PCB_OB
KH_KhpA-B
aRib
Motif
Other DBs
NCBI-ProteinID:
QMS56784
UniProt:
A0A7D7L343
LinkDB
All DBs
Position
1699039..1701294
Genome browser
AA seq
751 aa
AA seq
DB search
MEGPEIQSAEAVIDNGSYGKRVVRFETGRLARQAAGSAMVYIDEETSMLSATAVGKHPRE
GFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFGKGLRNEVQ
VVVTVMSIAPDEIYNTVAINAASMSTTLSGMPFQGPVGGVRMALMAEENGGHQWIAFPKH
SQLENAVFDMAVAGRVVTTKDGGEDVAIMMVEAEATDNAWELVKGQGAVAPTEELVAEGL
EASKPFIKALCDAQADLAARNKKPEMELPRFGGFGDDAAEAVKNFVGERMAQVYSIAGKQ
EREAATDELHRDTLAELAGEGKAFEGRADEINGAYQALTKQTVRQRILKDGVRIDGRGLT
DIRELSAEVDVLPRVHGSALFERGETQILGVTTLNMLKLEQQIDSLSPVKHKRYIHHYNF
PPYSTGETGRVGSPKRREIGHGALAERAITPVLPTREEFPYAIRQVSEALGSNGSTSMGS
VCAATLSLFNAGVPLRAPVAGIAMGLVSDTVDGEVQYAALTDILGAEDALGDMDFKVAGT
SEFVTAIQLDTKLDGIPASVLASALTQAREARLYILDVLTSAIDAPDEMSEFAPRVISVT
VPVSKIGEVIGPKGKMINQIQEDTGTDISIEDDGTVYIGATDGPSAEAARSAINAIANPQ
VPEVGERYLGTVVKTTTFGAFISLTPGKDGLLHISEMRQLNDDKRVNEVDDVLAVGQKVQ
VEITKVDDRGKLSLSPVVAGSDAPADTDDEN
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
ttggagggtcccgagatccagagtgcagaagccgtcatcgacaacggctcttacggaaag
cgcgtcgtgcgcttcgaaaccgggcgtctcgcccgtcaggccgccggctccgccatggtc
tacatcgacgaggagacctcgatgctctcggccacggccgtgggcaagcacccccgggag
ggcttcgacttcttcccgctgaccgtggacgtggaggagcggatgtacgccgccggccgc
attcccggttccttcttccgccgcgagggccgtccgtccacggacgcgatcctcacgtgc
cgtctgatcgaccgcccgctgcgccccgcgttcggcaagggcctgcgcaacgaggtgcag
gttgtcgtcacggtcatgtccatcgcgccggacgagatctacaacaccgtggcgatcaac
gccgcgtccatgtccaccacgctgtccggcatgcccttccagggtccggtgggcggtgtg
cgcatggcactgatggccgaggagaacggcggccaccagtggatcgcgttccccaagcac
tcccagctggagaacgccgtgttcgacatggcggtcgccggccgcgtggtgaccaccaag
gacggcggtgaggacgtcgcgatcatgatggtcgaggcggaggccaccgacaacgcgtgg
gagctcgtcaagggccagggggccgtcgcccccaccgaggagctcgtggccgagggcctt
gaggcctccaagccgttcatcaaggccctgtgcgacgcgcaggcggacctcgcggcccgc
aacaagaagcccgagatggagctgccgcgcttcgggggcttcggcgacgacgccgccgag
gccgtgaagaacttcgtgggcgagcgcatggcgcaggtctactcgatcgccggcaagcag
gagcgcgaggccgccaccgacgagctgcaccgggacaccctggcggagctcgccggcgag
ggcaaggccttcgagggccgcgcggacgagatcaacggcgcctaccaggcgctcaccaag
cagaccgtgcgccagcggatcctgaaggacggcgtgcgcatcgacggccgcggcctcacg
gacatccgtgagctcagcgccgaggtggacgtgctgccgcgagtgcacggctccgcactg
ttcgagcgcggcgagacccagatcctgggtgtcaccacgctgaacatgctcaagctggag
cagcagatcgactcgctgtccccggtgaagcacaagcgctacatccaccactacaacttc
ccgccgtactccacgggcgagaccggccgcgtgggctcgcccaagcgccgcgagatcggc
cacggcgccctcgccgagcgcgcgatcacccccgtgctgcccacgcgcgaggagttcccg
tacgcgatccgccaggtctcggaggcactgggctccaacggctccacctccatgggctcg
gtctgcgccgccacgctgtcgctgttcaacgccggtgtgccgctgcgcgccccggtggcg
ggcatcgccatgggtctggtctccgacaccgtggacggcgaagtccagtacgcggccctg
accgacatcctgggtgcggaggacgcgctcggcgacatggacttcaaggtggctggcacc
tcggagttcgtcacggccatccagctggacaccaagctcgacggcatccccgcctccgtg
ctcgcgtccgcgctgacccaggctcgtgaggcccggctgtacatcctggacgtgctgacg
tccgcgatcgacgccccggacgagatgagtgagttcgcgccgcgcgtgatctcggtgacg
gtccccgtctccaagatcggcgaggtcatcggccccaagggcaagatgatcaaccagatc
caggaggacaccggcacggacatctccatcgaggacgacggcacggtgtacatcggggcc
accgatggtccgtccgcggaggccgcgcgttccgcgatcaacgcgatcgctaacccgcag
gtccccgaggtgggggagcgctacctgggcacggtcgtgaagaccaccaccttcggtgcg
ttcatctccctgaccccgggcaaggacggtctgctgcacatctccgagatgcgccagctc
aacgacgacaagcgcgtcaacgaggtggacgacgtcctggccgtgggccagaaggtccaa
gtggagatcaccaaggtggacgaccgcggcaagctctcgctctcgcccgtcgtcgccggt
tccgacgcaccggccgacaccgacgacgagaactga
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