Kocuria varians: CIB50_0001580
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Entry
CIB50_0001580 CDS
T06882
Name
(GenBank) putative RNA pseudouridine synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
kvr
Kocuria varians
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kvr03009
]
CIB50_0001580
Enzymes [BR:
kvr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
CIB50_0001580
Ribosome biogenesis [BR:
kvr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CIB50_0001580
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
CFAP143
SYY_C-terminal
Motif
Other DBs
NCBI-ProteinID:
QMS56861
UniProt:
A0A7D7Q381
LinkDB
All DBs
Position
1792599..1793711
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AA seq
370 aa
AA seq
DB search
MAASHGNSARGGGARGPQGRGKGSKAGPKGGFRSGPGKSSGSGKGSGPGKGSRTGDAAGR
GYAKGPASGRGKGPGKPKAAAGQKGPQKPRAFAGVDKYERRASAIKEHGPHRRRRPKNPP
VDRLEVHDENGVRLQKLMAQAGVASRRVCEEMIQDGRVSVDEQIVTELGVRVDPALQVVH
VDGMRIQTDEKLVYYAFNKPAGVVSTMEDPDGRRCVSDYLDPRKHERVFHVGRLDVETEG
LLLLTNDGELTNRLTHPSYEVPKTYLVQVHGPVEKGIGNQMKEGIRLEDGIAKVDDFRLV
DSTPGHVLIEVVLHSGRNRIVRRMFDAVDHPVEKLARTHVGPIAIGDQKQGTVRKLSHTE
VGNLLASVGM
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatcacacggcaactcggcacgcggcggaggcgcccgcggcccccaggggcgc
ggcaagggatccaaggccggccccaagggcgggttccgctccggaccgggcaagagctcc
ggatctggcaagggctccggcccgggcaagggctcgcgcacgggcgacgccgccgggcgc
ggctacgccaagggtcctgcttccgggcggggcaagggcccgggcaagcccaaggctgcc
gccgggcagaagggcccgcagaagccccgcgccttcgcgggtgtggacaagtacgagcgc
cgcgcctcggcgatcaaggagcacggcccgcaccggcgccgtcgtcccaagaacccgccg
gtggaccggctggaggtccacgacgagaacggcgtgcggctgcagaagctcatggcgcag
gccggcgtggccagccgtcgggtgtgcgaggagatgatccaggacggccgcgtgagcgtg
gacgagcagatcgtcaccgagctcggcgtgcgcgtggatcccgcgctgcaggtggtccac
gtggacggcatgcgcatccagacggacgagaagctcgtctactacgcgttcaacaagccc
gccggtgtggtctccaccatggaggacccggacggccgccgctgcgtgagcgactacctg
gacccccgcaagcacgagcgcgtgttccacgtgggccgcctggacgtggagaccgagggg
ctgctgctgctgaccaacgacggcgagctcaccaaccgcctgacccacccctcctacgag
gtgcccaagacgtacctcgtgcaggtgcacgggcccgtggagaagggcatcggcaaccag
atgaaggagggcatccgcctggaggacggcatcgccaaggtggacgacttccgcctggtg
gactccacccccggccacgtgctcatcgaggtggtcctgcactccgggcgcaaccggatc
gtgcgccgcatgttcgacgccgtggaccaccccgtggagaagctcgcccgcacccacgtg
ggccccatcgcgatcggggaccagaagcagggcacggtgcgcaagctttcgcacaccgag
gtgggcaacctcctcgcgtccgtggggatgtga
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integrated database retrieval system
