Kocuria varians: CIB50_0001685
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Entry
CIB50_0001685 CDS
T06882
Symbol
pdhD
Name
(GenBank) Dihydrolipoyl dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
kvr
Kocuria varians
Pathway
kvr00010
Glycolysis / Gluconeogenesis
kvr00020
Citrate cycle (TCA cycle)
kvr00260
Glycine, serine and threonine metabolism
kvr00280
Valine, leucine and isoleucine degradation
kvr00310
Lysine degradation
kvr00380
Tryptophan metabolism
kvr00620
Pyruvate metabolism
kvr00630
Glyoxylate and dicarboxylate metabolism
kvr00640
Propanoate metabolism
kvr00785
Lipoic acid metabolism
kvr01100
Metabolic pathways
kvr01110
Biosynthesis of secondary metabolites
kvr01120
Microbial metabolism in diverse environments
kvr01200
Carbon metabolism
kvr01210
2-Oxocarboxylic acid metabolism
kvr01240
Biosynthesis of cofactors
Module
kvr_M00009
Citrate cycle (TCA cycle, Krebs cycle)
kvr_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
kvr_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
kvr_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
CIB50_0001685 (pdhD)
00020 Citrate cycle (TCA cycle)
CIB50_0001685 (pdhD)
00620 Pyruvate metabolism
CIB50_0001685 (pdhD)
00630 Glyoxylate and dicarboxylate metabolism
CIB50_0001685 (pdhD)
00640 Propanoate metabolism
CIB50_0001685 (pdhD)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
CIB50_0001685 (pdhD)
00280 Valine, leucine and isoleucine degradation
CIB50_0001685 (pdhD)
00310 Lysine degradation
CIB50_0001685 (pdhD)
00380 Tryptophan metabolism
CIB50_0001685 (pdhD)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
CIB50_0001685 (pdhD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
kvr04147
]
CIB50_0001685 (pdhD)
Enzymes [BR:
kvr01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
CIB50_0001685 (pdhD)
Exosome [BR:
kvr04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
CIB50_0001685 (pdhD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
HI0933_like
FAD_binding_2
DAO
GIDA
AlaDh_PNT_C
FAD_oxidored
NAD_binding_8
Amino_oxidase
3HCDH_N
Trp_halogenase
NAD_binding_9
Motif
Other DBs
NCBI-ProteinID:
QMS56960
UniProt:
A0A7D7Q5C4
LinkDB
All DBs
Position
complement(1902855..1904222)
Genome browser
AA seq
455 aa
AA seq
DB search
MADNQYDILVLGGGSAGYSAALRAVQLGYSVALIEKEKLGGTCLHWGCIPTKAYLHSAEL
AEGARESEKYGIKATLESIDMGAVRDYKNKIVQGKYKGLTGLMKMRKVDVVAGNGKLTGP
NTIDVDGTTYTGKHIILATGSVSKTLGIEIGGRVMTSTEALEIDFVPKSAIVLGGGVIGC
EFASMWRSFGVDVTVIEGLPHLVANEDPAIIKTLEREFKKRGIKYNLGTFFEKVEQNDDG
AKVTLADGKEFEADVVLVAVGRGPNTADMGFEEQGIPMDRGFVTPNERLHTGVGSIYAIG
DIVPGVQLAHRGYQQGRFVAEEIAGLNPVVVPDINVPKVTFTEPEIASVGYSQPKAEEKF
GKDNVETFEYNLAGNGKSSILGTGGFIKLVREKDGPIVGFHAIGTRISEQIGEGQLMVNW
EAYPEDVAAFVHAHPTQNEAIGEAAMALAGVPLHG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacaaccaatacgacatcctggtcctgggcggaggatccgccgggtactccgcc
gcactgcgcgcggtccagctgggctacagcgtggctctgatcgagaaggagaagctcggc
ggcacgtgcctgcactggggctgcatccccacgaaggcgtacctgcactcggcggagctg
gccgagggcgcccgggagtccgagaagtacggcatcaaggccaccctcgagtccatcgac
atgggtgcggtgcgcgactacaagaacaagatcgtgcagggcaagtacaagggcctgacc
gggctcatgaagatgcgcaaggtggacgtcgtcgccggcaacggcaagctcaccgggccc
aacaccatcgacgtggacggcaccacctacaccggcaagcacatcatcctggccaccggc
tcggtctccaagaccctcggcatcgagatcggcggccgcgtgatgacctccaccgaggcg
ctggagatcgacttcgtccccaagtccgcgatcgtgcttggcggcggtgtcatcggctgc
gagttcgcgtccatgtggcgctccttcggcgtggacgtcaccgtgatcgagggcctgccc
cacctcgtcgccaacgaggacccggccatcatcaagacgctcgagcgcgagttcaagaag
cgcggcatcaagtacaacctgggcacgttcttcgagaaggtcgagcagaacgacgacggc
gccaaggtcaccctcgcggacggcaaggagttcgaggccgacgtcgtgctcgtggccgtg
ggccgcggccccaacaccgcggacatgggcttcgaggagcagggcatccccatggaccgc
ggcttcgtgaccccgaacgagcggctgcacaccggcgtgggcagcatctacgcgatcggc
gacatcgtcccgggcgtgcagctggctcaccgcggctaccagcagggccgcttcgtggcc
gaggagatcgccgggctgaaccccgtggtcgtcccggacatcaacgtccccaaggtcacc
ttcaccgagccggagatcgcgtccgtgggctactcgcagcccaaggccgaggagaagttc
ggcaaggacaacgtggagaccttcgagtacaacctggccggcaacggcaagagctcgatc
ctcggcaccggcggcttcatcaagctggtgcgcgagaaggacggccccatcgtcggcttc
cacgcgatcggcacccgcatcagcgagcagatcggcgagggccagctcatggtgaactgg
gaggcctacccggaggacgtggcggcgttcgtccacgcccaccccacgcagaacgaggcc
atcggcgaggcggccatggcgctggccggtgtcccgctgcacggctga
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