Kocuria varians: CIB50_0001710
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Entry
CIB50_0001710 CDS
T06882
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
kvr
Kocuria varians
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
PCMT
DUF3151
FtsJ
TRM5-TYW2_MTfase
NHase_beta_C
Motif
Other DBs
NCBI-ProteinID:
QMS56985
UniProt:
A0A7D7KZG6
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All DBs
Position
1934468..1935910
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AA seq
480 aa
AA seq
DB search
MTDAPAPLVLRLGAVAHGGHVVARTDEGRVVFVRHGLPGELVRVRLTDHEPTASFWRGDV
VEVLEPAAGRRDAHVWSQADAVLAAAAGTSPLGGAEFGHADLATQRELKTSVVGEQLSHL
AGLEWDGHVRAVAGETPDGTGWRTRLHLDVAPDGSAGMYPHRSGELVPVTDMPLATDALR
ALAPWELRYEGAERVDVAAPSGSAPLLHVSLRADARQEQLDALRERLGPWGEQHGVSVTA
RTADHRAVGVWTGTGESVETLDLPEAGGHFSWRVSPTGFWQIHRQAPATLVRAVLDAAQF
TPGDAVWDLYSGAGLFTAVAARAVGETGSVLAVEGSPVTSADAARNLADAPHVSAVRGDV
ARVLTGRGPRARGGQRRGHGRATSSRPGGRTGGRTGGSTPARPDVVVMDPPRAGAAKDVL
AAVDHAAPRRIVYVACDPAALGRDLGRLRRRGWRVDGVEAFDLYPNTHHVEAVALLRRDG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcccccgcccccctcgtgctgcgcctcggcgccgtcgcccacggcggacac
gtggtggcacgcacggacgagggccgcgtggtcttcgtccgccacggtctgcccggggaa
ctggtccgcgtgcgcctcacggaccacgagcccaccgcctctttctggcgcggggacgtc
gtcgaggtcctggagcccgccgccgggcgccgcgacgcccacgtgtggtcccaggccgac
gccgtgctggcggccgccgcgggcaccagcccgctcggcggggccgagttcgggcacgcg
gacctggccacgcagcgcgagctgaagacgagcgtggtcggggagcagctctcgcacctc
gccgggctcgagtgggacgggcacgtgcgggccgtggcgggggagacccccgacggcacc
ggctggcgcacccgcctgcacttggacgtggccccggacggttcggccggcatgtacccg
caccgcagcggcgagctcgtccccgtgacggacatgcccctggccacggacgccctgcgg
gccctggccccgtgggagctgcgctacgaaggtgccgaacgcgtggacgtggccgcgccc
tccggcagcgcgccgctgctgcacgtgagcctgcgcgcggacgcccggcaagagcagctc
gacgccctgcgggagcgcctgggcccgtggggcgagcagcacggtgtcagcgtcaccgcc
cgcacggccgatcaccgcgccgtgggggtgtggaccggcacgggcgagagcgtggagacc
ctggacctgccggaggccggcgggcacttctcgtggcgcgtgagccccacgggcttctgg
cagatccaccggcaggccccggccacgctcgtgcgcgcggtcctcgacgccgcgcagttc
accccgggggacgccgtgtgggacctctacagcggcgcggggctgttcaccgccgtggcc
gcgcgggccgtgggggagacgggcagcgtcctcgccgtggagggctccccggtgacctcc
gccgacgccgcccgcaacctcgcggacgcaccccacgtgagcgcggtgcgcggcgacgtc
gcccgcgtgctcaccggacgcggcccccgggcacggggagggcagcggcgcggacacggg
cgtgcgacgtcgtcgcgccccggtgggcgcaccggcggtcgtaccggcgggtcgacgccc
gctcggccggacgtggtggtcatggacccgccgcgggccggtgccgccaaggacgtgctc
gccgcggtggaccacgccgccccgcggcgcatcgtctacgtggcgtgcgaccctgccgcg
ctgggtcgggacctcggcaggctgcgccgccggggctggcgcgtggacggggtcgaggcc
ttcgacctctatcccaacacgcaccacgtggaggccgtggcgctgctgcgccgcgacggc
tga
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