Kocuria varians: CIB50_0001717
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Entry
CIB50_0001717 CDS
T06882
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
kvr
Kocuria varians
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kvr03016
]
CIB50_0001717 (rnd)
Enzymes [BR:
kvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CIB50_0001717 (rnd)
Transfer RNA biogenesis [BR:
kvr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CIB50_0001717 (rnd)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
QMS56992
UniProt:
A0A7D7PTE5
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All DBs
Position
complement(1944079..1945338)
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AA seq
419 aa
AA seq
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MPGFEDFDIPATVHLNGPAEGLPRVVDTARGLARAAEQLAAATGPVAVDTERASGFRYGQ
RAFLVQLRREGAGTILIDPEAVGSLASVDESLRGVEWVLHAATQDMPCLAELDMRPDRLF
DTELGGRLLGLRKVGLASMTEELLGFTLSKEHSAVDWSRRPLPVDWLNYAALDVEVLVQL
RWATEERLSQAGKLDWALEEFEHVRTAPPPPPRQDPWRRTHGMGNVRGRRKLTALRNLWQ
ARENLARHKDLAPTRLLPDSALVAAANAMPRTVPQLLGTPGFHGRQAEREATRWLTAVQE
ARLAEEPVPATVPSNTLPPVKAWETKRPEAAARLSVVKPAVAHLAEELELPTENLLTPEH
LRRFCWQPPRSTSDDAVAERLRELGAREWQIRHVAPVIGAEWRALRSQRRSEKSVDAQD
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgggttcgaggacttcgacatcccagcgaccgtgcacctcaacggacccgcggag
ggcctgccgcgcgtcgtggacaccgcccgtggcctcgcccgcgccgccgagcagctcgcg
gcggccaccgggcccgtggccgtggacaccgagcgcgcctccggcttccgctacggccag
cgcgcgttcctcgtgcagctgcgccgggagggcgcgggcaccatcctcatcgaccccgag
gccgtggggtccctcgccagcgtggacgagtcgctgcgcggcgtcgagtgggtgctgcac
gcggccacccaggacatgccgtgcctcgccgagctggacatgcgacccgaccggctcttc
gacaccgagctcggcgggcgtctgctcgggctgcggaaagtgggcctggcctcgatgacc
gaggagctgctcgggttcacgctgtccaaggagcactccgcggtggactggtcgcgccgc
ccgctgcccgtggactggctgaactacgccgcgctggacgtggaggtcctggtgcagctg
cgctgggccaccgaggagcggctgtcccaggccgggaagctggactgggcgctcgaggag
ttcgagcacgtccgcaccgctcccccgccacccccgcgccaggacccgtggcgccgcacg
cacggcatgggcaacgtgcgcggacggcggaagctgaccgccctgcgcaacctgtggcag
gcccgcgagaacctggcccgccacaaggacctcgcccccacgcggctgttgcccgactcc
gcgctcgtggccgccgccaacgcgatgccccgcacggtgccccagctgctggggaccccc
ggtttccacgggcgccaggcggagcgggaggccacccggtggctcacggccgtccaggag
gcgcggctggccgaggagcccgtgcccgccaccgtcccctccaacaccctgcctccggtg
aaggcgtgggagaccaagcgcccggaggccgccgcgcggctctcggtggtcaagccggcc
gtcgcgcacctcgcggaggagctggagctgcccacggagaacctgctgacgccggagcac
ctgcgccgcttctgctggcagccgccgcgctccacgtccgacgacgccgtggcggagcgg
ctgcgcgagctcggcgcccgcgagtggcagatccggcacgtggcacccgtgatcggcgcc
gagtggcgggccctgcgctcacagcggcgctccgagaagtcggtggacgcgcaggactga
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