Kocuria varians: CIB50_0002209
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Entry
CIB50_0002209 CDS
T06882
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
kvr
Kocuria varians
Pathway
kvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIB50_0002209 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kvr03021
]
CIB50_0002209 (rho)
03019 Messenger RNA biogenesis [BR:
kvr03019
]
CIB50_0002209 (rho)
Transcription machinery [BR:
kvr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CIB50_0002209 (rho)
Messenger RNA biogenesis [BR:
kvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CIB50_0002209 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
NACHT
Motif
Other DBs
NCBI-ProteinID:
QMS57466
UniProt:
A0A7D7L0W5
LinkDB
All DBs
Position
complement(2524275..2526413)
Genome browser
AA seq
712 aa
AA seq
DB search
MTESTAPEQGTETSQAQSTGLSGLKLAQLQALAAQLGITGARRMRKSLLVEAIEAHQRGG
AVAARDKAVEEKIEQTAHQASRRHKDTDGDDAATAGSTKGASQAGSGAAEDTKSADASSA
EGEDGESNGKRQNGSRRSRRAAGSAERQNEQSSQEEKSENQKNESTDSGEESKDGSGRGG
RNQRSRGNRGEKSSQQENSGAKDEKSQDAKRDEKSEGGRGRGNQKDSKDGGQDRNDRDNR
NERRDSRDSKDSGDGGQDGSNRNERRNRNNNNGGGNDGEGGSRRNRRNRNRNDRSDRDNR
GDRNDRSDRNERRNRRNRNNGPDVDDVEITEDDVLLPVAGILDVLDNYAFVRTSGYLPGP
SDVYVSLSQVKKNNLRKGDAIVGAIRAPREGEQHNNSRQKFSALVQLTTVNGRKPEENAD
RVEFNKLVPLYPQERLRLETDPKKIGPRVVDLVAPIGKGQRGLIVSPPKAGKTLMLQSIA
NAITTNNPEVHLMMVLVDERPEEVTDMQRTVKGEVIASTFDRPADDHTTVAELAIERAKR
LVEMGMDVVVLLDSMTRLGRAYNLSAPASGRILSGGVDSAALYPPKKFFGAARNIENGGS
LTILATALVETGSKMDEVIFEEFKGTGNMELRLSRQLADRRIFPAVDVNSSGTRREENLL
SPEEIKIMWRLRRVLSGLEQQQALELLTSKLRDTQSNAEFLLQVQKTTLAGH
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaatccaccgcccccgaacagggaacggaaacctcacaggcccagagcaccgga
ctctccgggctcaagctcgcgcagctgcaggccctggccgctcagctcggcatcaccggc
gcccgccggatgcgcaagtccctcctggtcgaggcgatcgaggcgcaccagcgcgggggc
gccgtcgccgcccgcgacaaggccgtcgaggagaagatcgagcagaccgctcaccaggcc
tcccgccgccacaaggacacggacggcgacgacgccgccacggccggcagcaccaagggc
gcctcccaggctggctcgggtgccgccgaggacaccaagtctgcggacgcgtcctccgcc
gagggcgaggacggcgagtcgaacggcaagcgtcagaacggctcgcgccgctcccgccga
gcggccggctctgccgagcggcagaacgagcagtcctcccaggaggagaagtccgagaac
cagaagaacgagtccacggactccggcgaggagtccaaggacggctccggccgcggcgga
cgcaaccagcgttcgcgcggcaaccgcggggagaagtcctcgcagcaggagaactccggc
gccaaggacgagaagtcccaggacgccaagcgggacgagaagtccgagggcggccgcggc
cgcggcaaccagaaggactccaaggacggcggccaggaccgcaacgaccgggacaaccgc
aacgagcgccgggactcccgcgactcgaaggactccggggacggcggccaggacggctcg
aaccgcaacgagcgccgcaaccgcaacaacaacaacggcggcggcaacgacggcgagggc
ggttcgcgccgcaatcgtcgcaaccgcaaccggaacgaccgcagtgaccgggacaaccgc
ggcgatcgcaacgaccggagcgaccgcaacgagcgccgcaaccggcgcaaccgcaacaac
ggtccggacgtggacgacgtcgagatcaccgaggacgacgtcctgctgcccgtggcaggc
atcctggacgtgctcgacaactacgcgttcgtgcgcacctcgggctacctgcccgggccc
tcggacgtctacgtgagcctgtcccaggtcaagaagaacaacctgcgcaagggtgacgcc
atcgtgggtgccatccgggcgccgcgcgagggggagcagcacaacaactcccgccagaag
ttctccgcgctcgtgcagctgaccacggtcaacggccgcaagccggaggagaacgcggac
cgcgtcgagttcaacaagctcgtgccgctgtacccgcaggagcgcctgcgcctggagacg
gaccccaagaagatcggtccccgcgtggtggacctggtggccccgatcggcaagggccag
cgcggcctgatcgtctccccgcccaaggcgggcaagaccctgatgctgcagtcgatcgcc
aacgcgatcaccacgaacaaccccgaggtccacctcatgatggtgctcgtggacgagcgg
cccgaagaggtcacggacatgcagcgcacggtgaagggcgaggtcatcgcctccaccttc
gaccgtcccgcggacgaccacaccacggtggcggagctcgcgatcgagcgcgcgaagcgt
ctggtggagatgggcatggacgtggtggtcctgctggactccatgacccgcctgggccgc
gcgtacaacctctccgcaccggcctccggacgcatcctgtccggcggtgtggactccgct
gcgctgtacccgcccaagaagttcttcggcgcggcgcgcaacatcgagaacggcggctcg
ctgaccatcctggccaccgcgctcgtggagaccggttccaagatggacgaggtcatcttc
gaggagttcaagggcaccggcaacatggagctgcggctctcccgccagctcgcggaccgg
cgcatcttcccggccgtggacgtcaactcctccggcacgcgccgcgaggagaacctgctc
tcgcccgaggagatcaagatcatgtggcgcctgcgccgtgtgctctccggtctcgagcag
cagcaggccctggagctgctcacgagcaagctgcgggacacccagtccaacgccgagttc
ctgctgcaggtccagaagaccacgctcgccggtcactag
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