Kocuria varians: CIB50_0002221
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Entry
CIB50_0002221 CDS
T06882
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kvr
Kocuria varians
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvr03019
]
CIB50_0002221
Enzymes [BR:
kvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CIB50_0002221
Messenger RNA biogenesis [BR:
kvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CIB50_0002221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_25
PhoH
AAA_30
ABC_tran
NACHT
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QMS57477
UniProt:
A0A7D7Q4B5
LinkDB
All DBs
Position
2539707..2543900
Genome browser
AA seq
1397 aa
AA seq
DB search
MTEPSTAPRIVYPEDLPVSARREDIMAAIRDHQVVVVAGETGSGKTTQLPKMCLELGLGE
GGLIGHTQPRRIAARSVAERIAHELGERVGDTVGYQVRFTSEVGRDSRVKLMTDGIMLAE
ISHDPTLSRYNAIIIDEAHERSLNIDFLLGYLRQLLPQRPDLKIVITSATIDPQRFAEHF
AQPDPLHPEAELEPAPIIEVSGRTYPVEIRYRPLSQERSGDGGEDEEETGDGLADEDRDP
IDAVCDAVVELSREPRGDILVFFAGEREIRDAQDALQKVIDSHRSLAGTQILPLFGRLSM
AEQNRVFSPSSHRRIVLATNVAETSLTVPGIKYVVDPGTARISRYSARTKVQRLPIERIS
QASAKQRAGRSGRTSDGVCIRLYSQEDFESRPEFTDPEILRTNLAAVILQMISVGVVSQP
SDITEFPFVQKPDARAVKDGVLLLRELGALRGSGDPHEDDAASSSASGRRSRRGRRGRGP
RGGERAKGPLTRTGEILAALPVDPRLGRMIVESQRRGCVREVLVLTAALTVQDPRERPLE
KRQAADEFHARFRDKTSDFLSFGLLWQYLQEQQDELSSSQFRKLCRREYLNFLRIREWQD
LYAQLRQIARQVGIDAGGSREIDVAANQDSVHKSLLSGLLSNVGVRDERSREYRGARGTR
FAIFPGSALFRKSPDWLVSAELVETSRLWARTNAAISPEWVEEIAPHLVKRSYSEPHWSR
SRGAVMASEKVTLYGLPLVSERPVLFSSIDPALSRELFIRHALVEGDWQTRHTFVKRNRR
ALAEVEELENRMRRKDLRVDDQVLFDFYDARVPEKVVSQRHFDSWWKKARHEDEHLLDLT
PQDLIAPEAPALDTESFPRSWTVPTPDGELSLDLDYEFAPGADTADGVTVRIPVLFLDRL
SPEQFEWHIPGLRVELVTALIKSLPKAVRRNFVPAPDTAASAVARLDEEFDPARDSLLAS
LATVLQRMRGHTVTAADFRPEALPPHLRMRFEVRDARNAVLGRGDDLTELKQRLRPRVRE
ALAASLGGAAAQLYDAAHADDAAAGPGGRRGTGSAGSGRRSRGSESAGASAGNSGSRDGA
RSGSGRRRPGGNGAQATPPTASLERTDLTAWPEPDPPRSVETLVAGQTVTGYPTLVAVPP
AAPGTTEVPRVDLRILSDPEEQRAAQRDGVIALLQRVLPSVHRYVVEHLSQKERLIFTQN
PHGSVEALIHDCTVAAIDRLVPQEPPFTREEFDRVAEHVRAELIDTVFAVTALVTTTLTE
ATTVRRRLKKPGSLGAVAAFKDMSEQVERLVYPGFVARTGWQALQRLPRYLAGVNGRLDK
LSGHLQRDAVAMQTVHDLEAEYRRAREAVPATVPVPAALTAVRWDLEELRVSFFAQELGT
AHSVSEKRIRKKLRELS
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcccagcaccgcaccccgcatcgtgtacccggaagacctgcccgtcagtgcg
cggcgggaggacatcatggccgccatccgcgaccaccaggtggtggtggtcgccggtgag
acgggttccggaaagaccacccagctgcccaagatgtgtctggaacttggtctgggcgag
ggcggcctgatcgggcacacccagccccgcaggatcgccgcacgttccgtggccgagcgg
atcgcccacgagctcggcgagcgcgtgggcgacaccgtgggctaccaggtgcgcttcacg
tccgaggtgggccgggactcccgggtgaagctgatgacggacggcatcatgctggccgag
atcagccacgaccccacgctctcgcgctacaacgcgatcatcatcgacgaggcccacgag
cgctccctgaacatcgacttcctgctgggctacctgcgccagctgcttccccagcgtccg
gatctgaagatcgtgatcacctcggcgaccatcgacccgcagcgctttgcggagcacttt
gcgcagccggatccgcttcacccggaggctgagcttgagcctgccccgatcatcgaggtc
tccggacgaacctaccccgtggagatccgctaccggccgctgagccaggagcgcagcggg
gacggcggagaggacgaggaggagaccggggacgggctcgcggacgaggaccgggacccg
atcgacgcggtgtgcgacgccgtcgtcgagctctcccgggagccccgcggggacatcctc
gtgttcttcgcgggcgagcgggagatccgggacgcccaggacgccctgcagaaggtcatc
gactcccaccgctcgctggccgggacccagatcctgccgctgttcggcaggctgtccatg
gcggagcagaaccgggtgttctccccctcctcgcaccggcggatcgtgctcgccaccaac
gtggccgagacctctctgacggtgccggggatcaagtacgtggtggacccgggtacggcg
cggatctcgcgctactcggcccgcaccaaggtgcagcggctgcccatcgagcgcatctcc
caggcctcggcgaagcagcgtgccgggcgcagcgggcgcacctcggacggcgtgtgcatc
cggctgtactcgcaggaggacttcgagtcccgcccggagttcacggacccggagatcctg
cgcacgaacctcgcggcggtgatcctgcagatgatctccgtgggggtggtctcgcagccc
tcggacatcacggagttccccttcgtgcagaagccggacgcccgcgccgtgaaggacggg
gtcctgttgctgcgcgagctcggtgcgctgcggggttccggggacccgcacgaggacgac
gccgcgtcgtcgtccgcctccggccgccgctcccggcgtggtcgccgcggccgcggtccg
cggggcggggaacgtgcgaaggggccgctcacccgcacgggcgagatcctcgccgcgctg
ccggtggatccgaggctgggccggatgatcgtggagtcccagcgccgcggctgcgtgcgc
gaggtgctcgtgctgaccgccgcgctcaccgtgcaggacccgagggagcgcccgctcgag
aagcgccaggcggcggacgagttccacgcgcggttccgtgacaaaacctcggacttcctc
tccttcgggctgctgtggcagtacctgcaggagcagcaggacgagctctcctcctcccag
ttccgcaagctgtgccggcgggagtacctgaacttcctgcggatccgggagtggcaggac
ctctacgcgcagctgcgccagatcgcgcggcaggtgggcatcgacgccggcggttcgcgc
gagatcgacgtggccgcgaaccaggactccgtgcacaagtccctgctctccgggctgctg
agcaacgtgggcgtgcgtgacgagcgcagccgggagtaccggggcgcccgcggcacgcgc
ttcgcgatcttcccgggctcagccctgttcaggaagtccccggactggctcgtgtccgcg
gagctcgtggagacctcccggctgtgggcgcgcaccaacgccgccatctcccccgagtgg
gtcgaggagatcgccccgcacctcgtcaagcgcagctactccgagccacactggtcccgc
tcgcgcggcgccgtgatggcctcggagaaggtcacgctctacggcctgcccctggtgagc
gagcggcccgtgctgttctcctcgatcgaccccgccctctcgcgcgagctgttcatccgc
cacgccctcgtggagggcgactggcagacccgccacacgttcgtcaagcgcaaccgccgg
gcgctcgcggaggtcgaggagctcgagaaccgcatgcgccgcaaggacctgcgcgtggac
gaccaggtgctcttcgacttctacgacgcccgcgtcccggagaaggtggtctcccagcgc
cacttcgactcgtggtggaagaaggcccgccacgaggacgagcacctgctggacctcacc
ccgcaggacctgatcgcccccgaggcccccgcgctggacacggagtccttcccccgctcc
tggacggtccccaccccggacggcgagctcagcctcgacctcgactacgagttcgccccc
ggcgctgacaccgcggacggggtcaccgtgcggatccccgtcctcttcctggaccggctg
tcccccgagcagttcgagtggcacatccccgggctgcgggtggagctcgtgaccgccctg
atcaagtccctgcccaaggccgtgcgccgcaacttcgtgcccgccccggacaccgccgcg
agcgccgtcgcccgcctggacgaggagttcgaccccgcccgggactcgctgctcgcctcc
ctggccacggtgctgcagcgcatgcgcgggcacacggtcacggccgccgacttccggccg
gaggcgctgccgccccacctgcggatgcgcttcgaggtgcgcgacgcccgcaacgccgtg
ctcggccgtggggacgacctcacggagctcaagcagcggctgcggcccagggtccgggag
gcgctcgcggcgtccctgggcggtgccgcggcccagctctacgacgccgcccacgcggac
gacgccgccgcgggccccggaggccgtcgaggcaccggttccgccggctcgggcaggcgg
tcgcggggctcagagtcggcaggggcgagcgccggaaactcgggctctcgtgacggagcc
cgctcgggctcgggacgacgtcgcccgggcggcaacggcgcccaggccaccccgcccacc
gcctcgctggagcgcacggacctcactgcctggccggagccggacccgccccgcagcgtg
gagacgctcgtggccggtcagacggtcaccggctaccccaccctcgtggccgtgcccccg
gcggcaccggggaccacggaggtcccgcgcgtggacctgcgcatcctgagcgaccccgag
gagcagcgggcggcccagcgcgacggcgtgatcgcgctgctgcagcgcgtcctgccctcg
gtgcaccgttacgtggtggagcacctcagccagaaggagcggctgatcttcacgcagaac
ccgcacggttccgtggaggcgctgatccacgactgcacggtggccgcgatcgaccggctc
gtgccgcaggagccgccgttcacccgcgaggagttcgaccgcgtggccgagcacgtgcgc
gcggagctcatcgacaccgtcttcgccgtgacggccctggtgaccaccacgctcacggag
gccaccacggtgcgcagacggctgaagaagcccggctccctgggggctgtcgcggccttc
aaggacatgtcggagcaggtggagcggctcgtctacccggggttcgtggcccgcaccggg
tggcaggccctgcagcgcctcccccgctacctggccggggtgaacgggcggctggacaag
ctctccgggcacctgcagcgcgacgccgtggccatgcagacggtgcacgacctcgaggcc
gagtaccgccgcgcccgcgaggccgtcccggccaccgtgccggtgcccgccgcgctgacc
gccgtgcggtgggacctcgaggagctgcgcgtgtccttcttcgcgcaggagctcggcacc
gcccactcggtctcggagaagcggatccgcaagaagctgcgcgaactgtcctga
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