Kocuria varians: CIB50_0002299
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Entry
CIB50_0002299 CDS
T06882
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
kvr
Kocuria varians
Pathway
kvr03420
Nucleotide excision repair
kvr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIB50_0002299 (pcrA)
03430 Mismatch repair
CIB50_0002299 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kvr03400
]
CIB50_0002299 (pcrA)
Enzymes [BR:
kvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIB50_0002299 (pcrA)
DNA repair and recombination proteins [BR:
kvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CIB50_0002299 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
CIB50_0002299 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
wHTH-PRTase_assc
Motif
Other DBs
NCBI-ProteinID:
QMS57552
UniProt:
A0A7D7PU94
LinkDB
All DBs
Position
complement(2634316..2637972)
Genome browser
AA seq
1218 aa
AA seq
DB search
MQENSEEKVRYTPEQIAEALGEHPPTEQQSAVISSPLTPRLVVAGAGSGKTTTMSDRVAW
LVANELARPEEILGVTFTRKAAGELSQRINVKLRKLRAAGLIAGPDGEDEAPAAVQEPTV
STYHSYANSLVRSYGLRLGVESDTVLLGQAQAWQLAHDLVQSWDGPLPAKVPAASTLTTG
LMKLASEASEHLVDAGRVREYVHDLRLRCQDAPPEGRKRTPGKVTSVLARMEQTEVLAEL
VERFHAVKRFDSALDYGDLLALAARIVRVDPHARTVERDRFRVVLLDEFQDTSHAQLALF
SGLYGEGHCVMAVGDPQQSIYGFRGASSGQLFSFVENFPRRAAADEAPAQFADTSFLTTA
WRNSLSVLDVANTVAQPLRTPPPWSRSAATVEVPALDPAPGAVQGRVRVSRYLTDTEEAQ
EVAGRIHDQRAAHQGQPLEEMPTMAVLCRRRAQFEPLRLELEALDIPYEVVGLGGLLDTP
EVADVVAMLYVLTDPGRSDALARLLTGARWRLGARDLAALGDWAAALERGHERAARGEVG
DPAQSEPSRTGSSHAESSHADRASAGETTAGDATSEVATGGADAAEETVVMADIVDRASL
IEALETLPREDWVSPRGRSITPEGMRRLRALRRDVRELRQVLGDELTTVLHEVETVLGLD
VELAALPDADPAQARRNLDGFHDQAVQFTATTRTHDVPAFLEWLEAASHEENGLELPPSH
ARHDAVQLLTVHASKGLEWDHVHVPGLNGDDFPSKNPSAWTGEAAKLPWPLRGDAHQLPQ
WQARTENVRELEESFDEFLEDASEHDLAEERRLAYVAFTRAKSLLELSGSVFRGSSKGAK
NPSPFLLEARELADGDSAGIELGPWVEPEDGATNPQLDTRVSALWPYDPVEGPEIVRTAR
DAEGELTETVLPPAHRGRRARMDEAARAVREGGFDANRDLTDEDLEHGPSGELVTRWRRE
AELLLARREASDELRTVHMPSHVSASALVAMDTDPEEFVSTLRRPMPRRPGTAARAGTAF
HSWVEDFFGDAAIFDLDELPGSDDYVDENLDLPRLTETFRRSPWASLQPYAIELPVETPV
GSLTVRGRIDAVFRTEDGWELVDWKTGRIPRGRELRQKAGQLALYRLAFARLRGVPLERV
SAAFYYVAADEVVRPHDLADEQDLERIVTSLYARGSGSSTHAAEPTSGTADESAPEDTAP
SHTAPEHTAPDDAAPEEF
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggagaactccgaggagaaggtccggtacacaccggagcagatcgccgaggcgctg
ggggagcacccgcccaccgagcagcagtcggcggtgatctcctcgcccctgacaccccgg
ctggtggtggcgggtgcggggtccggcaagacgaccaccatgtccgaccgcgtcgcgtgg
ctcgtggccaacgagctcgcccgccccgaggagatcctcggcgtcacgttcacgcgcaaa
gcggccggcgagctgtcccagcggatcaacgtcaagctgcgcaagctgcgcgccgcgggg
ctgatcgccgggccggacggggaggacgaggccccggcggccgtccaggaacccaccgtg
agcacctaccactcctacgcgaactcgctggtgcgcagctacggcctgaggctcggcgtg
gagtcggacaccgtgctgctcggccaggcccaggcctggcagctggcccacgacctcgtc
cagagctgggacggccccctgccggcgaaggttccggcggcttccacgctgaccactggg
ctgatgaagctcgcctccgaggcgtccgagcacctggtggacgctggccgggtgcgcgag
tacgtccacgacctccggctgcgctgccaggatgccccgccggagggcaggaagcgcact
ccgggcaaggtcacgagtgtgctcgcgcgcatggagcagaccgaggttctcgccgagctc
gtggagcgcttccacgccgtgaagcgtttcgactcggcgctggactacggggacctgctg
gcgcttgcggcgcggatcgtgcgcgtggacccgcacgcccgcaccgtggagcgggaccgc
ttccgggtggtgctcctcgacgagttccaggacacctcgcacgcccagctcgccctgttc
tccgggctctacggcgaggggcactgcgtcatggccgtgggggacccccagcagtccatc
tacgggttccgtggcgcctcctccggccagctgttcagcttcgtggagaactttccccgg
cgcgcagcggcagacgaggcccccgcgcagttcgcggacaccagtttcctcaccaccgcg
tggcgcaacagcctctccgtgctggacgtggccaacaccgtggcccagcccctgcgcaca
cccccgccgtggagccgctcggccgccaccgtcgaggttcccgcgctggaccccgccccg
ggcgcggttcagggccgggtccgggtcagcaggtacctcacggacacggaggaggcgcag
gaggttgccggtcggatccacgaccagcgtgcggcccaccagggccagccgctggaggag
atgcccaccatggccgtgctgtgccgccgccgggcccagttcgagcccctgcgcctggag
ctcgaagccctggacattccctacgaggtggtgggtctggggggcctgctggacaccccg
gaggtcgccgacgtcgtcgccatgctgtacgtgctcacggatccgggccgctcggacgcg
ctcgcccggctgctgaccggtgctcgctggcggctcggagcccgggacctcgcggccctc
ggagactgggctgcggccctcgaacggggccacgagcgagcggcccggggcgaggtcggt
gatcccgcccagtccgagccctcccgcaccgggtcttcccatgccgagtcttctcacgcc
gatcgcgcttccgcgggagagaccacggccggggacgccacgagtgaggtcgccacgggt
ggggccgacgccgcggaggagacggtcgtcatggcggacatcgtggaccgggcgagcctg
atcgaggccctggagaccctgccgcgcgaggactgggtgtccccgcgcggccgcagcatc
accccggaggggatgcggcggctgcgggcgctgcgtcgggacgtccgcgagctgcgccag
gtcctcggtgacgagctgaccaccgtgctccacgaggtggagaccgtcctgggcctggac
gtggaactcgccgcgcttccggacgcggacccggcgcaggcgcggcggaacctggacggt
ttccacgaccaggccgtgcagttcacggccacgacccgcacgcacgacgtcccggcgttc
ctcgagtggctggaagcggcctcgcacgaggagaacggcctggagctgccgccgtcgcac
gcccggcacgacgccgtccagctgctcacggtgcacgcctccaaggggctcgagtgggac
cacgtccacgtgcccgggctcaacggggacgacttccccagcaagaacccgtccgcgtgg
acgggggaggcggcgaagcttccgtggcccctgcgcggggacgcccaccagctgccgcag
tggcaggcgcgcaccgagaacgtgcgtgagctggaggagtccttcgacgagttcctggag
gacgcctccgagcacgacctcgcggaggagcgtcgcctcgcctacgtggcgttcacacgc
gccaagtccctcctggaactgtccgggagcgtcttccgggggagctccaagggcgcgaag
aacccgtcgccgttcctgctggaggcacgggagctcgccgacggggacagtgcggggatc
gagctcggtccgtgggtggagccggaagacggtgccaccaacccgcagctcgacacccgg
gtcagcgctctgtggccctacgaccccgtggagggtcccgagatcgtgcgcaccgcgagg
gacgccgagggggagctcacggagacggtgctgccgccggcgcaccggggccggcgcgct
cggatggacgaggccgcccgtgccgtgcgggaaggcggtttcgatgcgaaccgcgacctc
acggacgaggacctcgagcacggtccctcgggggagctcgtgacccggtggcggcgggag
gcggagctgctgctggcccgacgcgaggccagcgacgagctgcggaccgtccacatgccg
tcccacgtgtccgcctccgcgctggtggccatggacacggaccccgaggagttcgtcagc
accctgcggcggcccatgccacgccgtccgggcaccgccgcacgcgcgggcaccgcgttc
cactcgtgggtcgaggacttcttcggggacgcggccatcttcgacctggacgagcttccc
ggttcggacgactacgtggacgagaacctcgacctgccccgcctcacggagaccttccgc
cgcagcccgtgggcctccctgcagccctacgcgatcgagctccccgtggagaccccggtg
ggatcgctcacggtgcgtgggcgcatcgacgccgtgttccgcaccgaggacggctgggag
ctcgtggactggaagacggggcggatcccgcggggtcgggagctgcggcagaaggcgggc
cagctggccctctaccggctggcgttcgcacgactgcgcggtgtccccctggagagggtc
tcggcggccttctactacgtggccgcggacgaggtcgtgcgcccgcacgacctcgcggac
gagcaggacctcgagaggatcgtgacatccctctacgcgcggggatcgggctcgtccacc
cacgccgcggagccgacgtccgggaccgcggacgagtccgcgccggaggacactgcaccg
agccacactgcaccggagcacactgcaccggacgacgccgcccccgaggagttctag
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