Ketogulonicigenium vulgare Y25: EIO_2604
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Entry
EIO_2604 CDS
T01338
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
kvu
Ketogulonicigenium vulgare Y25
Pathway
kvu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kvu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EIO_2604 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kvu03021
]
EIO_2604 (rpoB)
03400 DNA repair and recombination proteins [BR:
kvu03400
]
EIO_2604 (rpoB)
Enzymes [BR:
kvu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EIO_2604 (rpoB)
Transcription machinery [BR:
kvu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EIO_2604 (rpoB)
DNA repair and recombination proteins [BR:
kvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EIO_2604 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ADO43682
LinkDB
All DBs
Position
complement(2509508..2513653)
Genome browser
AA seq
1381 aa
AA seq
DB search
MAQSFLGQKRLRKSYGKIREVLEMPNLIEVQKSSYDLFLKSGDADKPQDGEGIQGVFQSV
FPIKDFNDTAVLEFVKYELEKPKYDVEECQARDMTYSAQLKVTLRLIVFDISEDTGMRSV
KDIKEQDVYMGDIPLMTQNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGMDQEGIMDAYYDTVEYRLEA
KSKGWITKFFPERVRGTRPTYDLVDAASGEVILEAGEKATPRMVKKWIDEGKVTDLLVPF
EHILGKFVAKDIINEDNGAIYVEAGDELLLERNRDGEITGGSLQELLEAGFTTVPVLDID
NVNVGAYIRNTMAADKNMGREGALMDIYRVMRPGEPPTVEAASDLFETLFFDSERYDLSA
VGRVKMNMRLDLDVADTVRTLRRDDIISCIKALVELRDGKGEIDDIDHLGNRRVRSVGEL
MENQYRVGLLRMERAIKERMSSGTPAIDTAMPQDLINAKPAAAAVREFFGSSQLSQFMDQ
TNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLAT
YARVNKYGFIETPYRKVVEGKVTDDVQYMSATEEMRHTIAQANAILDDEGRFVDELVDTR
QAGDYTLATRETVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEA
PLIGTGIESVVARDSGAAIMARRAGVVDQVDAQRVVIRATEDLSLGDAGVDIYRLRKFQR
SNQDTCINQRPLVKVGDLVGKGEVIADGPSTEMGELALGKNIVVAFMPWNGYNYEDSILI
SERIVSEDVYTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAHVG
PGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGNYGTIVEVRVFNRHG
VDKDERALQIEREEIESLSRDRDDELAILDRNIYARLKQVLLGKMAVKGPKGFKANTQVT
EEVLGEFSRGQWWQLAVEDEDDAKIVEALNEQYENQKKQLDARFEDKVEKVRRGDDLPPG
VMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRVVPAEDMPFLADGTPVDFCLNPLGVPS
RMNVGQILETHMGWASRALGLQIDEALKGYRRSGDLTPVKDALRFAYGDEVYAEGFETAS
EAVFLERAENATRGVPIATPVFDGAKEADINDALARAGFDTSGQSVLFDGRTGEQFARKV
TVGVKYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY
TLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDD
A
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggctcagtccttccttggccagaaacgcctgcgcaaatcctacggcaagatccgtgaa
gtcctagagatgccgaacctcatcgaggttcagaaatcctcttacgacctgttcctgaag
tcgggtgatgccgacaagcctcaggacggcgaggggattcaaggcgttttccaatcggta
ttcccgatcaaggatttcaacgataccgccgtgctggagttcgtgaaatacgaactggaa
aagcccaaatatgatgtcgaagagtgtcaggctcgcgacatgacctattccgcgcagctg
aaagtcacgctgcgcctgatcgtatttgatatcagcgaagacacgggcatgcgctcggtc
aaagatatcaaagaacaagacgtttacatgggggacatccccctgatgacgcaaaacggt
accttcgttgtgaacggcaccgaacgcgtgatcgtcagccagatgcaccgcagccccggc
gtgttctttgaccacgacaagggcaagacgcacagctcgggcaagctgctgttcgcctgc
cgcatcattccatatcgcggctcgtggctggactttgaattcgacgccaaggacctcgtg
ttcgcgcgtatcgaccgccgccgcaaactgccggtgacgacgctgctctatgccctgggc
atggatcaagagggcatcatggatgcctattacgataccgtcgaataccgtctggaagcc
aagtccaaaggctggatcaccaagttcttccccgagcgtgtgcgcggcacccgcccgacc
tatgatcttgtcgatgctgcatcgggcgaagtcattctggaagctggcgaaaaagccacg
ccccgtatggtcaagaaatggatcgacgagggtaaggtcaccgacctgctggtcccgttc
gaacatatcctgggcaaattcgtcgccaaagatatcatcaacgaagacaacggcgcgatc
tatgtcgaggctggcgacgagctgctgctcgagcgtaaccgcgacggcgaaatcactggt
ggctcgctgcaagagctgctggaagcgggctttaccactgttccggtgctggacatcgac
aatgtgaacgtcggtgcctacatccgtaacaccatggctgccgataagaacatgggccgc
gaaggcgcgctgatggatatctatcgcgtcatgcgcccgggcgagccgccgaccgtcgaa
gccgcgtccgatctgttcgaaacgctgttctttgatagcgagcgttacgatctgtcggct
gttggtcgcgtgaagatgaacatgcgtctggatctggatgtggccgataccgtccgcacc
ctgcgccgcgacgacatcatctcgtgcatcaaggcgctggtcgagctgcgcgatggcaaa
ggcgagatcgacgatattgaccacttgggtaaccgccgcgttcgctcggtcggtgagctg
atggaaaaccagtatcgcgtcggcctgctgcgcatggagcgcgcgatcaaagagcgtatg
tcctcgggcacgcctgcgatcgacaccgccatgccgcaagatctgatcaacgccaagccc
gccgcggctgcggtacgcgagttctttggctcgtcgcagctgtcgcagttcatggaccaa
acgaacccgctgtcggaagtcacccacaagcgccgtctttcggctctggggccgggcggt
ctgacgcgtgaacgtgcgggctttgaggtgcgcgatgtacacccgacccactatggtcgt
atgtgcccgattgaaacgcccgaaggtccgaacatcggtctgatcaactcgctggcgacc
tatgcccgcgtgaacaaatacggcttcatcgaaaccccctaccgtaaagtggtcgagggt
aaggtgacggacgacgtgcaatacatgtcggccaccgaagaaatgcgccacaccatcgcg
caggccaacgcgatcctcgacgacgaaggtcgtttcgtggacgagctggtcgatacccgt
caggccggtgactatacgcttgctacacgtgaaacagttgacctgattgacgtttcaccc
aagcagctggtctcggtcgccgcctcgctgatcccgttccttgagaatgacgatgcgaac
cgcgcactgatgggctcgaacatgcaacgtcaggccgtgccgctgctgcgcgcagaagca
ccgctgatcggtactggtatcgaaagcgtcgttgcacgcgattcgggcgccgccattatg
gcccgccgcgccggtgtcgttgaccaagtcgacgcccagcgtgtcgtgatccgtgcgacc
gaagatctgtcgctgggcgatgcgggcgtggacatctatcgtctgcgcaaattccagcgc
tcgaaccaagatacctgcatcaaccagcgtccgctggtgaaggtgggcgatctggtcggc
aagggcgaagtgattgctgacggcccctcgaccgaaatgggcgagctggctttgggcaag
aacatcgtcgtcgccttcatgccctggaatggctacaactacgaagactcgatcctgatc
tcggagcgtatcgtttcggaagacgtctatacctcgatccatatcgaggaattcgaagtc
gccgcacgtgatacaaagctggggccggaagagatcacccgcgacatcccgaacgtcggt
gaagaagctttgcgcaacctcgacgaggctggcatcgtttacatcggcgcgcatgttggc
ccgggcgatattctggtcggcaagatcactcccaagggcgaaagcccgatgacgccagaa
gaaaaactgctgcgcgccatctttggtgagaaggcctcggacgttcgtgacaccagcctg
cgtctgcccccgggcaactacggcaccatcgtcgaagtgcgcgtgttcaaccgccacggc
gtcgacaaggacgaacgcgccctgcagatcgagcgtgaagagatcgaaagcctgtcgcgc
gaccgcgatgacgagctggcgattctggaccgcaacatctatgcgcgcctgaagcaggtt
ctgctgggcaagatggctgtgaagggccccaaggggttcaaggccaacacccaagtgacc
gaagaggttctgggcgagttcagccgtggccaatggtggcaactggccgttgaggatgaa
gacgatgcgaaaatcgtcgaagccctgaacgaacagtatgaaaaccaaaagaaacagctg
gacgcgcgtttcgaagacaaggtcgagaaagtccgtcgcggcgacgatctgcctccgggc
gtgatgaagatggtcaaagtgttcgtggcggtaaagcgcaagctgcaaccgggcgataag
atggctggtcgtcacggcaacaagggcgtgatctcgcgcgtggttcctgcagaagacatg
ccgttcctggcagatggtacccccgtcgacttctgtctgaacccgctgggcgtgccctcg
cggatgaacgtcggtcagatcctggaaacccatatgggttgggcctcgcgtgcgctgggt
ctgcagattgacgaggcgctgaaaggctatcgtcgttcgggcgatctgaccccggtcaaa
gacgcgctgcgctttgcctatggcgacgaagtctacgctgaaggctttgaaaccgcgagc
gaggctgtcttcctcgagcgtgctgaaaacgcgacccgcggtgtgccaattgcaacgccc
gtctttgacggcgccaaggaagcggacatcaacgacgcgctggcacgtgctggtttcgac
acgtcgggccaatcggttctgttcgatggccgcactggcgagcaattcgcccgtaaggtc
accgtcggcgtgaaatacatgctgaagctgcaccaccttgtcgacgacaagatccacgcg
cgatcgaccgggccgtactcgcttgtcacgcagcagccgctgggtggtaaggcacagttc
ggtggccagcgtttcggggagatggaagtttgggccctcgaagcctacggcgccgcctac
accttgcaggaaatgctgacggtgaaatcggacgacgtggccggccggaccaaggtctat
gaatcgatcgtcaagggcgaggacaatttcgaagcgggcgtgcccgaatcgttcaacgtg
cttgtgaaggaagtgcgtggccttggcctgaatatggaactcctggatgcggaggatgac
gcgtaa
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