Ketogulonicigenium vulgare Y25: EIO_2862
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Entry
EIO_2862 CDS
T01338
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kvu
Ketogulonicigenium vulgare Y25
Pathway
kvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIO_2862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kvu03019
]
EIO_2862
03400 DNA repair and recombination proteins [BR:
kvu03400
]
EIO_2862
Enzymes [BR:
kvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EIO_2862
Messenger RNA biogenesis [BR:
kvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EIO_2862
DNA repair and recombination proteins [BR:
kvu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EIO_2862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
ADO43933
LinkDB
All DBs
Position
2765911..2767950
Genome browser
AA seq
679 aa
AA seq
DB search
MQKYETLRRVFGFDAFRPGQEEIVDSVTQGQNTLAIMPTGGGKSLCYQLPALCRGGVTVV
VSPLIALMRDQVRGLTQQGVVAGALTSANTPEENDAIWRALSDGQMKLLYLAPERLAAGA
TVQMLERVGVGLIAVDEAHCVSQWGHDFRPDYLRIGALRRALDVPLAAFTATADPETQLE
IVEKLFGGHAPATFLRGFDRPNIHLAFAAKDGPRQQILRFASARKGQSGIVYCGTRAKTE
VLAQALREAGIPACHYHGGMEPNLRRETEERFQQEDGLIVVATIAFGMGIDKPDIRWVAH
ADLPKSIEGYYQEIGRAGRDGAPAETLTLFGADDIRYRRAQIDEGAAPDDRKAADHARLN
ALLGLAEAQTCRRHGLLTYFGEAPPPPCQNCDLCDAPPALFDATTPVRMALSAIARTAQS
FGAGHIIDILTGNATDKLRERGHDALPTFGVGNGWSRPQWQGMFRQMMGLDLLRPDSARH
GALYLTEAARPVLKGEQPVTLRSDALKVAKSAPTVRAIVAEEDAPLFSALRAKRAALAKA
QGVPAYVIFPDKTLAEMVAAQPETLDDMARISGVGVKKLELYGEEFLAVLTGEAARLHPM
RRRLAGQAGGQLYDLLLAAQADLQRGTSGFDKPMSLSSAELARVAKARPHDMDAMTRLIG
EKHAERFGAAFLRAIERAN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatacgaaaccctgcgcagggtcttcggctttgacgcctttcgccccgggcaa
gaggaaatcgtcgattccgtgacccagggccagaatacgctggccatcatgccgacaggc
gggggcaagtcgctgtgttatcagctacctgcgctgtgccggggcggggtgacggttgtg
gtctcgccgctgattgcgctgatgcgcgatcaggtgcgcgggctgacgcagcagggcgtt
gtcgcaggcgcgctgacatccgccaacacgcccgaggaaaatgacgccatctggcgcgca
ttatccgatggtcagatgaagctgctgtatctggcacccgaacgccttgccgccggggcc
actgtgcagatgctggaacgcgtcggcgtcggcctgatcgcggtggacgaggcgcattgc
gtcagccaatggggccatgatttccgccccgattacctgcgcatcggcgcattgcgccgc
gcgctggatgtgccgctggcggcctttaccgccaccgccgaccccgaaacccagcttgag
attgtcgaaaagctgttcggcggccatgcccccgcgacctttctgcgcggctttgatcgc
ccgaacatccacctcgcttttgcggcgaaagacggaccgcgccagcagatcctgcgcttt
gcttctgcgcgcaaggggcagtccggtatcgtctattgcggcacccgcgccaagaccgaa
gtgctggcccaagccctgcgcgaagcgggcatccccgcctgccactatcacggcggcatg
gagccgaacctgcggcgcgagaccgaggagcgtttccagcaagaagacgggctgatcgtc
gttgccaccatcgcttttggcatgggcatcgacaaacccgatatccgctgggtcgcccat
gccgatctgcccaaatcgatcgagggctattatcaggaaatcggccgcgccggccgcgac
ggtgccccggccgagacgctgacgctgtttggcgccgacgatatccgttaccgccgcgcc
cagatcgacgaaggcgccgcccccgatgaccgcaaggccgccgaccatgcccgcctgaac
gcccttctgggtctggccgaggcgcagacctgccgccgccacgggttgctcacctatttt
ggcgaggcaccgccgccgccgtgccagaactgcgatctgtgcgatgcgccgcccgctttg
ttcgatgcgacgacgcccgtgcgcatggcgctgtctgccatcgcccgcaccgcgcaaagc
tttggcgcgggccatatcattgatatcctgaccggaaatgcgaccgataaactgcgcgag
cgtggccatgatgccctgccgacctttggcgtcggcaatggctggtcgcggccgcagtgg
cagggcatgttccgccagatgatgggcctcgaccttttgcgccccgacagcgcccgccac
ggtgcgctttacctgaccgaggccgcgcgtcccgtgctcaagggcgaacagccggtcacc
ttgcgatctgatgcgttgaaggtcgcgaaatccgcccccaccgtgcgtgccattgtggcc
gaggaggatgcgccgctgttttccgccctgcgcgccaaacgcgcggcgctggcgaaggca
cagggcgtgcccgcctatgtcatctttcccgacaagaccttggccgaaatggtcgccgcg
cagcccgagacccttgacgatatggcccgcatcagcggcgtcggcgtgaaaaagctggag
ctttatggcgaggaattccttgccgttctgaccggcgaggccgcgcgcctgcatccgatg
cgccgcaggcttgccggacaggcgggcgggcagctttatgacctgctgctggcggcgcag
gccgatctgcagcgggggaccagcggctttgacaaacccatgagcctgtcgtcggcggaa
ctcgcgcgcgtggccaaggcgcgcccccatgacatggatgcgatgacccgcctgatcggc
gaaaaacacgccgagcgcttcggcgcggcttttcttcgcgccatagagcgcgcaaactag
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