Kurthia zopfii: NCTC404_00706
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Entry
NCTC404_00706 CDS
T05934
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kzo
Kurthia zopfii
Pathway
kzo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC404_00706 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kzo03400
]
NCTC404_00706 (mfd)
Enzymes [BR:
kzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC404_00706 (mfd)
DNA repair and recombination proteins [BR:
kzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC404_00706 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
VEI05329
LinkDB
All DBs
Position
1:complement(734581..738090)
Genome browser
AA seq
1169 aa
AA seq
DB search
MEILHQLFMNDAEIEKFINDLKNGQRSQLVTGLSGSARPTMIGTAFEETKKSMYIIAPNM
LQAQNLYEDLSKLIGEELVHYYPADEFIAADMTVASPELRAQRIETINHMLNDQRGIYII
PAAGMRKIMPPKDLWKELNVQIELGEELDTELLLSNLVTMGYSRNGMVTTPGEFALRGGI
IDIYPPYYENPVRIELFDTEVDSIRTFSADDQRSIDKLTQLTILPASEFVLSKENRVALA
LRLEDGLAQSLKQVQSDSVKTTLLENVQSDITLLKEGQLPEFTNRYGSLLYENPTFLGDY
FQKDGVVIFEEIARIQEVMDAWEKEEKDWMLEMIEIGKMVHSVKPSFSFQEILANIPQQK
VFFTLFTRGFTGIKFTETYNFSCKPMQHFHGQIDLLQSEIKRWQSSNFTVIFMTDVKERT
GILQDLLEEHGVKVQIGTPNGAGVFILSGHLTSGFELPMQKIAVVTEEELFKQQKKRKTR
PKTMTNAERIKSYTEIKPGDYIVHVHHGIGKYIGIETLEINGNFKDYLQIRYRADDKLFV
PIDQIDLIQKYVGSEDKEPKLHKLGGVEWKKTKTKVAKAVQDIADDLIKLYAEREAAKGF
AFSPDDAQMREFEESFPYEETEDQLRTIQEVKIDMERERPMDRLVCGDVGYGKTEVAIRA
AHKAVLDGKQVAFLVPTTILAQQHYETMIERFQDTPVNIGVLSRFRSKKQQNETLAALHE
GKIDILVGTHRILSKDVAYKDLGLLIVDEEQRFGVTHKEKIKTLKTNVDVLTLTATPIPR
TLHMSMVGVRDLSVIETPPANRFPVQTYVMEHNGALIREAIEREMARGGQVFYLHNRVDD
MGKQIDLIQTLVPEARIARAHGKMTESELESVILAFLDGEYDVLVTTTIIETGIDIPNVN
TLIVNNADRMGLSQLYQLRGRVGRSNRVAYAYFMYQRDKVLTEVAEQRLQAVKEFTELGS
GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLEEAVEEKQTGEKKVEEHNIEIL
IPFDAYLPDEYIPDGYQKIQMYKRIRSIQTEKDYSEIIDELVDRFGDLPTEVDRLMRIAR
MKAWGKEVGLNSVKYKNKMYKIELSPEGTAQIDGSKMVSDSMSLGRAVGFTMENNMLALT
VDERKVSKSQDLFELVEAVVKLLPDALKE
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggaaattttgcatcaattatttatgaatgacgctgaaattgagaaatttataaatgat
ttaaagaacgggcaaaggtcacaattagtaacaggattatctggaagcgcaagaccaaca
atgattggaacagcttttgaagaaacgaagaaatcgatgtatataattgcgccgaatatg
cttcaagctcaaaacttatatgaagatttatcaaaattaattggtgaagagcttgtacat
tattatcctgctgatgaatttattgcagcggacatgacagtggcaagtcctgaactaaga
gcgcaaagaattgaaacgattaaccatatgttgaatgatcaacgtggaatatatatcatt
ccagcggccggcatgcgtaaaattatgccaccaaaagacctttggaaggaattaaatgtc
caaattgagttaggggaagaactcgatacagaattactgttatcgaacctcgtaacaatg
ggctattcaagaaatggcatggtaacgactccaggagaattcgcattacgcgggggaatt
atcgatatttacccaccatattatgagaatcccgttcgtatcgaattatttgatacggaa
gtggattctattcgtacgttttctgcggatgaccaacgttcaattgataaattgacgcaa
ttaacgattttacctgcttctgaatttgttttatcaaaagaaaatcgtgtcgcactagcg
cttcgtttagaagatggcttggcacaaagtttgaaacaagtgcagtcagattcagtgaaa
acaacattacttgaaaatgtgcagtctgatattactttattaaaagaagggcagttacca
gagtttacgaaccgttatggctcactgctttatgaaaaccctactttcttaggggactat
ttccaaaaagatggcgtagttatttttgaggaaattgcgcgaattcaagaagtgatggat
gcttgggagaaggaagaaaaagattggatgctcgaaatgatcgaaatcgggaaaatggtc
cattctgttaaaccatctttcagcttccaagaaattttagcgaatattccacaacaaaaa
gtgttcttcacgctgtttacacgtggatttacaggtattaaatttacagaaacatataac
ttttcatgtaaaccaatgcaacatttccatggtcaaattgatttacttcaatctgaaatc
aaacgttggcaatcgagtaacttcactgtaatttttatgacagatgtcaaagaacgtaca
gggattttacaagatctattggaagagcatggtgtgaaagttcaaattggtacacctaat
ggcgcaggtgtcttcattttatctgggcatctgacatcgggatttgaattgccgatgcag
aaaatcgctgttgtgacggaagaagaattattcaaacaacagaaaaaacgaaaaacacgt
ccgaaaacgatgacgaatgcggaacgaatcaaaagttatacggaaataaagccgggtgac
tatatcgttcacgttcatcacgggattggtaaatatattgggatcgaaacattagaaatc
aacggtaatttcaaagattacttacaaattcgataccgcgcagatgataaattattcgtg
ccaatcgaccaaattgacttaatccaaaaatatgtcggctcggaagataaagaaccgaaa
ttgcataaacttggtggcgttgaatggaagaaaacgaaaacgaaggtcgcaaaagcagta
caagatattgcggatgatttaattaagttatatgcagaacgtgaagcagcgaaaggtttt
gcattctctcctgacgatgcacaaatgcgtgagtttgaggaatcattcccatacgaagag
acggaagatcaacttcgtacaattcaagaagttaagatcgacatggagagagaacgtcca
atggatcgtctagtatgtggggatgttggttacggtaagacggaagtggcgattcgtgct
gcgcataaggcagttttagatggtaagcaagtagcatttttagtgccgacgacgattctt
gcgcaacagcattatgaaacgatgattgaacgattccaagatacacctgtgaacattggg
gtattgagtcgtttccgctctaaaaaacagcaaaatgaaacattggcggcgttgcatgaa
ggaaaaattgatattttagtaggcacacatcgtattttatcgaaagacgtagcctataaa
gatttaggattactaattgtcgatgaggaacagcgctttggtgtgacacataaagagaaa
atcaaaactttaaaaacaaatgtagatgtattgacgcttacggctacaccaattccaaga
acattgcatatgtcgatggtcggcgtgcgtgatttatcggtaattgaaacacctccagcg
aaccgtttcccagtgcaaacgtatgtcatggaacacaatggcgcattaattcgagaagcg
attgagcgagagatggcacgtggtgggcaagtattttatcttcacaatcgtgtcgatgat
atgggcaaacagattgaccttattcagacgctcgttccagaagctcgaattgcgagagcg
catgggaaaatgacagaatcagagttggaatcggttattttagcattccttgatggtgaa
tatgatgtattagtgacgacaacgattattgagactgggattgatattccaaacgtaaat
acattgatcgtcaacaacgcagatcgtatgggcttgtcacaattgtatcaactgcgtggt
cgagtagggcgttcaaaccgtgtagcttacgcttatttcatgtatcaaagagataaagta
ctgacagaagttgccgagcaaagacttcaagctgtaaaagaatttacggagttaggttct
ggattcaaaattgcgatgcgtgatttatcaatacgtggtgcagggaatttacttggagcg
caacaacatggctttatcgattcagttggcttcgatttatattctcaaatgttagaagaa
gcagttgaagagaagcaaacaggtgagaaaaaagtagaggaacataatatagagatcttg
ataccattcgatgcttatttaccggatgaatatattccagatggctatcaaaaaatccaa
atgtataaacgaattcgttcgattcaaacagagaaagattatagtgaaatcatcgacgaa
ttagtcgaccgtttcggagatttacctacagaagtagatcgtctaatgcgaattgctcgt
atgaaggcttggggtaaagaagttggtctgaattcggttaaatacaaaaataaaatgtat
aaaattgaactatcgcctgaaggaacagctcaaattgacggttctaaaatggtgtcagat
tcgatgagcctaggccgcgctgtcggctttacgatggagaataatatgttagcattgacg
gttgatgaacgaaaagtttcgaaaagtcaggatttatttgaactagtcgaagcagtcgtg
aaattattacctgatgctttaaaagaataa
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