Kurthia zopfii: NCTC404_01963
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Entry
NCTC404_01963 CDS
T05934
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
kzo
Kurthia zopfii
Pathway
kzo03030
DNA replication
kzo03430
Mismatch repair
kzo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC404_01963 (ligA_2)
03430 Mismatch repair
NCTC404_01963 (ligA_2)
03440 Homologous recombination
NCTC404_01963 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kzo03032
]
NCTC404_01963 (ligA_2)
03400 DNA repair and recombination proteins [BR:
kzo03400
]
NCTC404_01963 (ligA_2)
Enzymes [BR:
kzo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC404_01963 (ligA_2)
DNA replication proteins [BR:
kzo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC404_01963 (ligA_2)
DNA repair and recombination proteins [BR:
kzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC404_01963 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
BRCT
PTCB-BRCT
BRCT_2
DUF2779
Motif
Other DBs
NCBI-ProteinID:
VEI06686
LinkDB
All DBs
Position
1:complement(1912418..1913224)
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AA seq
268 aa
AA seq
DB search
MNFISMVIKTANQWPDSICGIELIKIEENKETDSFSTFIHTSQSFDPFYTSVHGIEANDV
ANSPTFEQMIPVLEQWLQNETVLSFHHEFEAQCLNESFEQLGKLKPIFTHYSVLPYFKNK
IDESYFSYTLHDLTNHFIQEDVYNDAEKIAKLVVHFLQNETHWTAKLVENTVITQKEIQS
IFQKTVVFTGGLSGMRRAEAAKLVMQAGGAFSNTMSKKVDLLVVSNSSFEKFNNNGAQSS
KWVKAASLQNAGHEITILTEDEFLPLIK
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
ttgaactttatttcaatggttataaaaacagccaatcaatggccggatagtatttgcgga
attgaattaatcaaaatagaagaaaataaagaaacggactctttctcaacatttattcat
acgtcacaatcattcgatccattttacacatctgtgcatggcattgaagcgaatgacgtt
gcgaattcacccacttttgagcaaatgatccccgttttagaacaatggctacaaaatgaa
acggtactctcttttcatcatgaatttgaagcacaatgtttgaatgaaagttttgaacaa
cttggcaaactaaaacctattttcacgcattatagtgttttaccctattttaaaaataaa
attgatgaatcgtatttttcctacactttacatgatttgacgaatcattttattcaagaa
gacgtctataatgatgctgaaaaaatcgcgaaattagttgtccactttttacaaaatgag
acacactggactgcaaaattagttgaaaatacagtaatcacgcaaaaagaaattcaatcg
atttttcaaaaaacggttgttttcacaggtggtttaagtggtatgcgtagagcagaggct
gcaaaattagtcatgcaagccggtggagcatttagtaatacgatgtccaaaaaagtagat
ttacttgtcgtcagcaattcgagtttcgagaagtttaacaataacggtgcgcaaagctca
aaatgggtgaaagctgcatctttgcaaaacgcaggacatgaaattaccattttaaccgaa
gatgagtttctgccacttatcaaatag
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