Kurthia zopfii: NCTC404_02478
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Entry
NCTC404_02478 CDS
T05934
Symbol
cshB
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshB
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
kzo
Kurthia zopfii
Brite
KEGG Orthology (KO) [BR:
kzo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kzo03019
]
NCTC404_02478 (cshB)
03009 Ribosome biogenesis [BR:
kzo03009
]
NCTC404_02478 (cshB)
Enzymes [BR:
kzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC404_02478 (cshB)
Messenger RNA biogenesis [BR:
kzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC404_02478 (cshB)
Ribosome biogenesis [BR:
kzo03009
]
Prokaryotic type
rRNA helicases
NCTC404_02478 (cshB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
AAA_30
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VEI07647
LinkDB
All DBs
Position
1:complement(2411140..2412453)
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AA seq
437 aa
AA seq
DB search
MSKYTDYNFQPFLRDAIEKLGFTEPTQIQKEMIPLIQKGKSAIGQSHTGTGKTHSFLIPI
VERIRQDKEEVQTVIAVPTRELAQQIFGELAKLIEGSNIQTKLFIGGTDKQRSIDKLKTQ
PQIVVGTPGRLRDLVNEQALLVHTAQVLVVDEADLAFDMGFIEDIDQFASQMGDNLEMYV
FSATVPESLQPFLRKYMASPVHVQMNDKRPVAENLDFYLVPTRSQSKNEKLLEVIKSINP
YLSIIFVNTRKQADYVANFLANNGVKAGRIHGDLTPRDRKRMMKQIRELEFQYIVATDLA
ARGIDIPGISHVINYELPQDLEFFIHRVGRTARAGNKGQAITIFEPSEEDAIARIEKMDI
SFVMKDIKNNELVDMKDRHTRQKRDGAKKEDDIDRIAKSKVRKPKKVKPGYKRNMRWEMD
KIKKKERRKRARSRTKN
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaatatacagattataattttcagccgtttctaagagacgcgattgagaaatta
ggttttacagaaccaactcaaattcaaaaagaaatgatccctttaattcaaaaagggaaa
agtgccattggccaatcacacacgggtacagggaaaacacatagtttccttattccaatc
gtagaaagaattcgtcaagataaagaggaagtacaaacagtaatcgctgtacctactcgc
gaattagcgcaacaaatcttcggtgaattagctaagttaattgaaggttcaaatatccaa
acaaaattatttatcggtggtacggataaacaacgttcaattgataaattaaaaacacaa
ccacaaattgttgtaggtacaccgggtcgcctgcgcgatttagtaaatgaacaagcttta
ttagttcatactgcacaagttcttgtagtggatgaagcggatttagcattcgacatgggc
ttcattgaagacatcgatcaattcgcatcacaaatgggcgacaacctagaaatgtacgta
ttctcagctactgtaccagaaagcttacaaccatttttacgtaagtacatggcttctcca
gtgcatgtacaaatgaatgataagcgtccagttgcggaaaacttagatttctacttagta
ccaacaagaagtcagtctaaaaatgaaaaattactagaagtaatcaagtcaattaatccg
tatttatcaattatctttgttaacacacgtaaacaagcggattatgtagcgaacttctta
gcgaataatggcgttaaagcgggtcgtattcatggtgatttaacaccacgtgaccgtaaa
cgtatgatgaaacaaattcgtgaacttgaattccaatatatcgtagcgactgatttagca
gcacgtggtatcgatattccagggatttcacatgtcattaactatgaattaccacaagat
cttgaattctttattcaccgtgtaggtcgtactgcgcgtgcaggtaataaaggtcaagcc
attacaattttcgaaccttcagaagaagatgcaatcgctcgaattgaaaaaatggatatt
tcttttgtcatgaaagatattaaaaacaatgaattagtagatatgaaagatcgtcacacg
cgtcaaaaacgtgatggagctaaaaaagaagacgacatcgatcggatcgctaaatcaaaa
gtccgtaaaccgaagaaagttaagccaggttacaaacgtaatatgcgttgggaaatggac
aaaatcaagaagaaagaacgccgtaaacgcgctcgttctagaacgaaaaactaa
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