Lysobacter antibioticus 76: LA76x_1840
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Entry
LA76x_1840 CDS
T04154
Name
(GenBank) DEAD-box-containing ATP-dependent RNA helicase family member
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lab
Lysobacter antibioticus 76
Pathway
lab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA76x_1840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lab03019
]
LA76x_1840
Enzymes [BR:
lab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LA76x_1840
Messenger RNA biogenesis [BR:
lab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LA76x_1840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Helicase_C_2
HEM4
Cas3-like_C_2
Flavi_DEAD
AAA_22
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
ALN79992
UniProt:
A0A0S2DZU3
LinkDB
All DBs
Position
2071288..2072616
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AA seq
442 aa
AA seq
DB search
MTFESLGLAPALLRALSEQNYTTPTPIQSEAIPLALAGHDLLGGAQTGTGKTAAFGLPLL
HRLATTQGNTQRKPRVLILAPTRELALQVSDSLRGYAKYLRLNIHAIFGGAGMGPQLDAL
RRGVDVLVATPGRLIDHLERGSAKLDGVEMLIMDEADRMLDMGFLPAIKRILGRLPQSRQ
TLLFSATFETQIKQLALEFMRNPQQVQIAANSLVAEAITHRVHPVDGGRKRDLLIDILAK
RPNDQVIVFGRTKHGCNRLAEQLEEAGLKSVAIHGNKSQAQRQKALRDFKANKARVLVAT
DVAARGLDIPSLPLVINFDLPMVAEDYVHRIGRTGRNGATGEALSLVSPDEGGLLRQIQR
ILKDDIEMVTVPGYEPSRPIRMGSDAPGARSPGGNNRGNNGPRKPAHRPHGKPAPRHAHA
GPKQHRGGAGAQPGQRRDRNAG
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttgaatcgctcgggcttgcgcccgcgttgctgcgcgccctttccgaacagaac
tacaccacgccgaccccgatccagagcgaagccattccgctcgcattggccggccacgac
ctgctcggcggcgctcaaaccggtaccggcaagacggcggccttcggcctgccgctgctg
caccgcctcgccaccacccagggcaacacccagcgcaagccgcgcgtgctgatcctcgcg
ccgacccgcgaactggcgctgcaggtcagcgacagcctgcgcggttacgccaagtacctg
cgcctcaacatccacgccatcttcggcggcgccggcatgggcccgcagctcgatgcgctg
cgccgcggcgtcgacgtgctcgtcgccacgccgggccgcctgatcgaccacctcgagcgc
ggcagcgccaagctcgacggcgtcgagatgctgatcatggacgaagccgaccgcatgctc
gacatgggcttcctgccggcgatcaagcgcatcctcggccgcctgccgcagtcgcgccag
accctgctgttctcggccacgttcgaaacccagatcaagcagctcgcgctggaattcatg
cgcaacccgcagcaggtgcagatcgccgccaacagcctggtcgccgaagccatcacccat
cgcgtgcatccggtcgacggcggccgcaagcgcgacttgctgatcgacatcctggccaag
cgtccgaacgatcaagtgatcgtgttcggccgtaccaagcacggttgcaatcgcctggcg
gagcagttggaagaggccggcctgaagtcggtcgcgatccacggcaacaagagccaggca
cagcgccagaaagccctgcgcgatttcaaggcgaacaaggcccgcgtgctggtcgccacc
gacgtcgccgcgcgcggtctcgacatcccgagcctgccgctggtgatcaacttcgacctg
ccgatggtcgccgaagactacgtgcaccgcatcggccgcaccggccgcaacggcgccacc
ggtgaagcgctgtcgttggtctcgccggacgaaggcggcctgctgcgccagatccagcgc
atcctcaaggacgacatcgagatggtgacggtgcccggctacgagccgtcgcgtccgatt
cgcatgggttcggatgcgccgggcgcgcgcagcccgggcggcaacaaccgcggcaacaac
ggaccgcgcaagccggcgcatcgtccgcacggcaagccggccccgcgtcacgcgcatgcc
ggtccgaagcagcaccgcggcggcgcaggcgcgcagccgggccagcgtcgcgaccgcaac
gccggttga
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