Lysobacter antibioticus 76: LA76x_2101
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Entry
LA76x_2101 CDS
T04154
Name
(GenBank) helicase conserved C-terminal domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lab
Lysobacter antibioticus 76
Pathway
lab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA76x_2101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lab03019
]
LA76x_2101
03009 Ribosome biogenesis [BR:
lab03009
]
LA76x_2101
Enzymes [BR:
lab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LA76x_2101
Messenger RNA biogenesis [BR:
lab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LA76x_2101
Ribosome biogenesis [BR:
lab03009
]
Prokaryotic type
rRNA helicases
LA76x_2101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
DUF6702
Motif
Other DBs
NCBI-ProteinID:
ALN80240
UniProt:
A0A0S2F9P5
LinkDB
All DBs
Position
complement(2355778..2357802)
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AA seq
674 aa
AA seq
DB search
MSADLTNTSPDTPKFTDLALSEPLLRALKDVGYESPSPIQAATIPPLLEGRDVLGQAQTG
TGKTAAFALPILAQIDPKQFKPQALVLAPTRELAIQVAEAFQKYAVHLPGFHVLPIYGGQ
SYYPQLQALKRGVHVVVGTPGRVIDHLDRGTLDLSELRCLVLDEADEMLRMGFIDDVENV
LKKTPESRQVALFSATMPSQIKRIAQTYLKEPVEIAIKSTTTTAANIRQRYWSVSGVHKL
DALTRILEAEPYDAMIVFSRTKLGTEELAEKLCARGLSAAAINGDVQQAQREKTIQNLKD
GKIDVLVATDVAARGLDVDRISHVLNYDIPYDTESYVHRIGRTGRAGRKGEAILFVTPRE
RGMLRAIERATRQPIEPMELPSVETVNEQRVARFLGRITEALESADLGLFREMVERYERE
KNVPAVEIAAALAKVVQGDSPLLLSPPPAAARYEREERDGPREHRGAATRKFVERDNASN
SGAHRKEFRQNDARPPREGERAPAPRREDRQYTPPSARPSNKAESLFDDESPAPRAERSP
RGAPEVGMETFRIEVGHAHGVQPGNIVGAIANEADLESRYIGRIDIRDDYTLIDLPEGMP
RELMEHLKKVRVAGHPLRIQHASPGDSEGGRSRRPGPGGPRGPGGPGGPRGPGGPGGPKS
HGGPRKPFKPRPPR
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgacctgaccaatacctcccccgataccccgaaattcaccgacctcgccctg
tccgagccgctgctgcgcgcgctcaaggacgtcggctacgagtcgccctcgccgatccag
gccgccaccatcccgccgctgctcgaaggccgcgacgtgctcggccaggcccagaccggc
accggcaagaccgccgcgttcgcgctgccgatcctggcccagatcgacccgaagcaattc
aagccgcaggccctggtgctggcgccgacccgcgagctggcgatccaggtcgccgaagcc
ttccagaagtacgccgtgcacctgcccggcttccacgtgctgccgatctacggcggccag
agctactacccgcagttgcaggccctgaagcgcggcgtgcacgtcgtggtcggcacgccc
ggccgcgtcatcgatcacctcgaccgcggcaccctggacctgtccgagctgcgttgcctg
gtgctcgacgaggccgacgaaatgctgcgcatgggcttcatcgacgacgtcgagaacgtg
ctcaagaagaccccggaatcgcgccaggtcgcgctgttctcggcgaccatgccgagccag
atcaagcgcatcgcccagacctatctgaaagagccggtcgagatcgcgatcaagtcgacc
accaccaccgccgccaacatccgccagcgctactggtcggtcagcggcgtgcacaagctc
gacgcgctgacccgcatcctcgaggccgagccttacgacgcgatgatcgtgttctcgcgc
accaagctcggcaccgaagagctggccgagaagttgtgcgcgcgcggcctgtcggcggcg
gcgatcaacggcgacgtgcagcaggcgcaacgcgagaagaccatccagaaccttaaggac
ggcaagatcgacgtgctggtcgccaccgacgtcgccgcgcgcggcctcgacgtggaccgc
atcagccacgtgctgaactacgacatcccctacgacaccgaaagctacgtccatcgcatc
ggccgcaccggccgcgccggacgcaagggcgaggcgatcctgttcgtgaccccgcgcgag
cgcggcatgctgcgcgcgatcgagcgcgccacgcgtcagccgatcgagccgatggagctg
ccgagcgtcgagaccgtcaacgagcagcgcgtcgcgcgcttcctcggccgcatcaccgaa
gccctggaaagcgccgacctcggcctattccgcgaaatggtcgaacgctacgagcgcgag
aagaacgtgccggcggtcgagatcgccgcggcgttggccaaggtggtccagggcgacagc
ccgctgctgttgagcccaccgccggcggccgcacgctacgagcgcgaagaacgcgacggc
ccgcgcgaacaccgtggcgcggcgacgcgcaagttcgtcgagcgcgacaacgcctccaac
tcgggcgcgcaccgcaaggaattccgccagaacgacgcgcgcccgccgcgcgaaggcgag
cgcgctccggcgccgcgtcgcgaagaccgccaatacaccccgccgtcggcgcgtccgtcc
aacaaggccgagtcgctgttcgacgacgagtcgcccgcgccgcgcgccgagcgcagcccg
cgcggcgcgcccgaagtcggcatggaaaccttccgcatcgaagtcggccacgcccacggc
gtccagcccggcaacatcgtcggcgcgatcgccaacgaagccgacctggaaagccgctac
atcggccgcatcgacatccgcgacgactacaccctgatcgacctgcccgaaggcatgccg
cgcgaactgatggagcacctgaagaaggtgcgcgtggccggccacccgctgcgcatccag
cacgccagcccgggcgattccgaaggcggccgcagccgccgtccgggcccgggcggcccg
cgtggccccggcggtccgggtggcccgcgcggtcctggcggccccggcggcccgaaatcg
cacggcggcccgcgcaagccgttcaagccgcgcccgccgcgctga
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