Lysobacter antibioticus 76: LA76x_3307
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Entry
LA76x_3307 CDS
T04154
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lab
Lysobacter antibioticus 76
Brite
KEGG Orthology (KO) [BR:
lab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lab03016
]
LA76x_3307 (rnd)
Enzymes [BR:
lab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LA76x_3307 (rnd)
Transfer RNA biogenesis [BR:
lab03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LA76x_3307 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ALN81434
UniProt:
A0A0S2FD17
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All DBs
Position
3813690..3814793
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AA seq
367 aa
AA seq
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MPVWITTPAALQAHFEVKPERIGLDTEFIRERTYWPQLALVQIAIESADADEPTILLVDP
LRPGIAEALAPILADESILKIVHSPSEDLVAFKHACGVVPKPLFDTQQAAALAGIGSGLG
YQKLVEQLTGVALAKGETRSDWMRRPLSPSQLEYAADDVRHLFAMQDALDGLLAPLGRRA
WLDEDAARTVYNAENEAPERWPHLSMRSAQFLDVPAQRRLVRLLRWRDAYARDSDRPRSW
ILDNELAVSIARQMPADRDALQRQLDAHPKAPRKLGDAIWTALSTELADEDQTPDAGVAE
TRDKQRLRQLQEAVATRSAALGLPDGVLASRRWLEALLDHGDWPDALSGWRRAALEPDLA
PLLAQQS
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtctggatcaccacccccgccgcgctgcaagcgcatttcgaggtcaagcccgaa
cgcatcgggctggacaccgaattcatccgcgaacgcacctactggccgcagctggcgctg
gtgcagatcgcgatcgaaagcgccgacgccgacgaaccgacgatcctgttggtcgacccc
ttgcgccccggcatcgccgaagcgctggcgccgatcctcgctgacgagagcatcctcaag
atcgtgcacagcccgagcgaggacctggtcgccttcaagcacgcctgcggcgtggtgccc
aagccgctgttcgacacccagcaggccgcggccctggccggcatcggcagcggcctgggc
tatcagaagctggtcgaacaactgaccggcgtggccctcgccaagggcgagacccgctcg
gactggatgcgccgcccgctctcgccctcgcagctcgaatacgccgccgacgacgtgcgc
cacctgttcgccatgcaagacgccctcgacggcctgctcgccccgctcggccgccgcgcc
tggctcgacgaagacgccgctcgcactgtctacaacgccgaaaacgaagccccggaacgc
tggccgcatctgtcgatgcgcagcgcccaattcctcgacgtccccgcgcagcgccgcctg
gtgcgcctgctgcgctggcgcgacgcctatgcgcgcgacagcgaccgcccgcgcagctgg
atcctcgacaacgaactcgccgtctcgatcgcgcggcagatgccggccgaccgcgacgcc
ctgcagcgccagctcgacgcccaccccaaggccccgcgcaagctcggcgacgccatctgg
accgcactgagcaccgagctggccgacgaagaccagacccccgacgccggcgtcgccgaa
acccgcgacaaacagcgcctgcgccaactccaggaagccgtggccacccgcagcgccgcc
ctcggcctgcccgacggcgtgctcgcctcgcgccgctggctcgaagccctgctcgaccac
ggcgactggcccgacgccctgtccggctggcgccgcgccgcactcgaacccgacctcgcc
cccttgctggcccaacagagctga
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