Labrenzia sp. PHM005: FJ695_01100
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Entry
FJ695_01100 CDS
T06152
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
labp
Labrenzia sp. PHM005
Pathway
labp02020
Two-component system
labp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
labp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FJ695_01100 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FJ695_01100 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
labp03021
]
FJ695_01100 (rpoN)
Transcription machinery [BR:
labp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FJ695_01100 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Mucin
Motif
Other DBs
NCBI-ProteinID:
QDG74579
LinkDB
All DBs
Position
complement(205471..207033)
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AA seq
520 aa
AA seq
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MAISTKLEMRQSQSLIMTPQLMQAIKLLQMSNLDLVSYVEAELERNPLLEKGEADPAENS
PSDVNTQAEAPAGDRADAQEVMTAADGEPGTGDWMQSDLETGAEAIASRMDTDLGNVFPD
EPGVPASPDPAQLKGGDSYKNASSSAASEDYNLEAFVADEESLVTSLEEQMNLAFASEAD
KLIAGHLINSLDENGYLYLDLAEAAEQLGVDLIRVENVLAVLQTFEPAGVFARNLAECLK
LQLIEKNRYDPAMEALIANIELLAKRDLAALKKLCGVDDEDLVEMVQEIRALDPKPGSVF
GGALVQPMVPDVFVRPASDGTWNVELNSDTLPKVLVNQTYYARVVKTARDETEKEYLTES
LQTANWLAKSLDQRAKTILKVSTEIVRQQDGFLTHGIEHLRPLNLKIIAEAIEMHESTVS
RVTSNKYMATPRGIFELKYFFSSAIAATVGGDAHSAESVRHKIKQMIDAEDPKAILSDDT
IVKVLKGEGVDIARRTVAKYREAMKIGSSVQRRREKNAKL
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggctatttcaaccaaattggagatgcggcaaagccagtcgctgatcatgacgccgcag
ctgatgcaggcgatcaagctgctgcaaatgtctaatctcgatttggtatcttatgtggag
gctgagcttgagcgcaatccactcctagaaaaaggtgaagccgacccggcagaaaactcg
ccgtccgatgtcaatacacaagcagaagctccggcaggtgatcgggcagatgcgcaagag
gtcatgaccgcggctgacggtgagccgggaacgggcgactggatgcagagcgatctggaa
actggtgcagaagccattgcctcgcggatggacaccgatctcggcaatgtgtttccggac
gaacccggcgttcctgcatcaccggatcctgcgcaattgaaaggcggtgacagctacaag
aacgcaagctccagcgcggcttcggaagattataatctggaagcctttgttgcagatgag
gagtctctcgtaacttcgctggaagagcagatgaatctggcctttgccagtgaagccgac
aagctgatagcgggccatctgatcaattctctcgatgagaacggatatctatatctggat
cttgccgaggcagctgagcagttgggcgttgatctgattcgagttgaaaacgtgctggct
gtcctgcagacatttgaaccggctggggtatttgcccgtaacctggctgaatgcttgaaa
ctgcagctcattgagaagaaccgctacgatccggcgatggaagccttgattgcgaatatt
gagttgcttgccaaacgggatcttgccgcattgaaaaaactgtgcggtgtggatgatgaa
gatcttgtggaaatggtccaggagatccgggcgctcgatccaaagccgggatcggtgttt
ggtggtgcccttgttcaaccgatggtgcccgatgtgtttgttcgccctgccagcgatggc
acttggaacgtcgagcttaactcagataccttgccgaaagtgctggtgaaccagacttac
tatgccagagtggtgaaaaccgcccgcgatgaaactgaaaaagagtatttaactgaatcg
cttcaaacagcgaactggctggccaagagcttggaccagcgcgccaaaacgatactgaaa
gtctcgacagagatagtccgccagcaggatggttttctgacccacggaatcgagcatctg
cgcccgctcaatcttaagatcatcgcggaagccattgagatgcacgaatcgaccgtcagc
cgggtgacgtcgaacaaatatatggcaacgcccagaggcatatttgagctgaagtatttc
ttttcctctgcaatcgccgcaacagttggtggagacgcgcattctgctgagtccgtgcgc
cacaaaatcaagcaaatgattgacgccgaagaccccaaagccattttatccgatgacacg
atcgttaaggttttgaagggggagggtgtggatatcgcgcggcgaacggtcgcaaaatac
agggaagctatgaaaatcggctcatctgttcagcggcggcgggagaagaacgcaaagctg
taa
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